Plant FIBer expression Database

Potri.004G122300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G15390 430 / 1e-151 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
AT2G19870 53 / 2e-07 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
AT4G38020 52 / 3e-07 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
AT4G15520 44 / 4e-05 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G147600
[exp]
60 / 7e-10 AT4G38020 335 / 5e-114 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
Potri.008G198200
[exp]
55 / 2e-08 AT4G15520 347 / 9e-123 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032993
[exp]
439 / 4e-155 AT5G15390 403 / 1e-140 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
Lus10012771
[exp]
52 / 2e-07 AT4G15520 348 / 2e-123 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
Lus10034004
[exp]
47 / 6e-06 AT4G15520 346 / 1e-122 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0098 SPOUT PF00588 SpoU_methylase SpoU rRNA Methylase family
Representative CDS sequence
>Potri.004G122300.1 pacid=42796360 polypeptide=Potri.004G122300.1.p locus=Potri.004G122300 ID=Potri.004G122300.1.v4.1 annot-version=v4.1
ATGGGAGCCTGCAAAACCCTTATCACCACCTCTCTTACTTCCCTCCCAAAACCCTTCTCTCCATTCTCCAAAACCCAAACCCAAACCCTAACCCACCCTC
CCTCTGTATCCTTCACTCCCTGCATACAACACACCAGACCTCGCTCTTCGACAGCAACCCAATCAGCATTCTCATTAGACCCCCCAGACGACACCGTTGA
ACTCCTTCTCACCAAACGGGACGATGTGTTACGACTAATGAAAATGGAAAGAAGAATAACAAAAACCCACGACGACACTGTCTTGGGTTCTCATTGGTTT
CCTTATTTCGACAGGTTCAAGTGTGAAGGTGTGGATTTGAGTAGCAGTGAGGTTTTGGAAGCGGTGGGGCCGTATATGATGGAAGAGAGAAAAGAGAGGA
TTCGAAATACGGTTAAGAGTAGGAGTTATTCCCTTTGTTTGGTTGTTGAAGGATTGACTGATTTCGGAAACGTTTCGGCCGTGTTTCGGTCTGCTGATGC
TTTGGGGTTTCAGTCTGTTCATGTCATTTCTTGTGATAGCTCCAAAAGATATAAAGAGAATAGGCATGTGAGCATGGGAGCAGAGAAATGGTTGGATATT
GAATTATGGGATTCTGCTAAAGACTGTTTTCAAGTTTTAAAATCACGCGGTTATCGGATTGCTACCACTCATGTTGGAATCGATGCGGTATCTATTTATG
ACATGGATTGGTCATGCCCAACTGCAATAGTTGTTGGAAATGAAAATAGGGGAATTAGTGATGAGGCTCTGGAACTGTCAGATTTGCATTGCAGTATTCC
TATGAAAGGCATGGTCGACTCCTTCAATGTTTCAGTTGCTGCAGGCATCCTCATGCATCATGCTGTTTGTGACAGAACTTCGCGCCTGGGCTCTCATGGT
GATTTGACCCCGGAAGAAACACAGATCCTGCTTGCTGAGTTTTCACTTCGTCATAGCAAGAATATGATAAGCATTGCCCATGACTATGCGAAGCGAAAGG
CAGCCACTCCCAAGCCAAAGCTATGA
AA sequence
>Potri.004G122300.1 pacid=42796360 polypeptide=Potri.004G122300.1.p locus=Potri.004G122300 ID=Potri.004G122300.1.v4.1 annot-version=v4.1
MGACKTLITTSLTSLPKPFSPFSKTQTQTLTHPPSVSFTPCIQHTRPRSSTATQSAFSLDPPDDTVELLLTKRDDVLRLMKMERRITKTHDDTVLGSHWF
PYFDRFKCEGVDLSSSEVLEAVGPYMMEERKERIRNTVKSRSYSLCLVVEGLTDFGNVSAVFRSADALGFQSVHVISCDSSKRYKENRHVSMGAEKWLDI
ELWDSAKDCFQVLKSRGYRIATTHVGIDAVSIYDMDWSCPTAIVVGNENRGISDEALELSDLHCSIPMKGMVDSFNVSVAAGILMHHAVCDRTSRLGSHG
DLTPEETQILLAEFSLRHSKNMISIAHDYAKRKAATPKPKL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G15390 tRNA/rRNA methyltransferase (S... Potri.004G122300
[exp]
0 1
AT2G21350 RNA-binding CRS1 / YhbY (CRM) ... Potri.009G122500
[exp]
1.73 0.9739
AT2G36000 EMB3114 EMBRYO DEFECTIVE 3114, Mitocho... Potri.006G205000
[exp]
2.82 0.9749
AT2G04030 Hsp88.1, AtHsp9... HEAT SHOCK PROTEIN 88.1, EMBRY... Potri.008G112700
[exp]
4.24 0.9654
AT1G23180 ARM repeat superfamily protein... Potri.008G131900
[exp]
7.41 0.9663
AT1G23400 CAF2, ATCAF2 ARABIDOPSIS THALIANA HOMOLOG O... Potri.010G042500
[exp]
7.74 0.9712
AT3G52170 DNA binding (.1.2) Potri.010G231900
[exp]
9.21 0.9539
AT1G63680 APG13, ATMURE, ... PIGMENT DEFECTIVE EMBRYO 316, ... Potri.001G103300
[exp]
9.48 0.9623 Pt-PDE316.1
AT3G09250 Nuclear transport factor 2 (NT... Potri.016G105600
[exp]
11.40 0.9617
AT2G38025 Cysteine proteinases superfami... Potri.016G110400
[exp]
13.74 0.9637
AT3G54090 FLN1 fructokinase-like 1 (.1) Potri.016G109600
[exp]
14.69 0.9629

Potri.004G122300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.