Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-EXP2.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69530 333 / 1e-116 ATHEXPALPHA1.2, AT-EXP1, ATEXP1, ATEXPA1, EXP1 EXPANSIN 1, expansin A1 (.1.2.3.4.5) AT3G29030 332 / 5e-116 ATEXP5, ATHEXPALPHA1.4, ATEXPA5 ARABIDOPSIS THALIANA EXPANSIN A5, ARABIDOPSIS THALIANA EXPANSIN 5, expansin A5 (.1) AT2G03090 330 / 4e-115 ATHEXPALPHA1.3, ATEXP15, ATEXPA15 EXPANSIN 15, expansin A15 (.1) AT1G26770 327 / 7e-114 ATHEXPALPHA1.1, AT-EXP10, ATEXP10, ATEXPA10 ARABIDOPSIS THALIANA EXPANSIN ALPHA 1.1, ARABIDOPSIS THALIANA EXPANSIN 10, expansin A10 (.1.2) AT5G56320 307 / 5e-106 ATHEXPALPHA1.5, ATEXP14, ATEXPA14 EXPANSIN 14, expansin A14 (.1) AT2G40610 300 / 5e-103 ATHEXPALPHA1.11, ATEXP8, ATEXPA8 expansin A8 (.1) AT5G02260 287 / 4e-98 ATHEXPALPHA1.10, ATEXP9, ATEXPA9 expansin A9 (.1) AT5G05290 285 / 2e-97 ATHEXPALPHA1.12, ATEXP2, ATEXPA2 EXPANSIN 2, expansin A2 (.1) AT2G39700 284 / 7e-97 ATHEXPALPHA1.6, ATEXP4, ATEXPA4 expansin A4 (.1) AT3G55500 281 / 1e-95 ATHEXPALPHA1.7, ATEXP16, ATEXPA16 EXPANSIN 16, expansin A16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G085300 [exp] 374 / 1e-132 AT1G26770 355 / 5e-125 ARABIDOPSIS THALIANA EXPANSIN ALPHA 1.1, ARABIDOPSIS THALIANA EXPANSIN 10, expansin A10 (.1.2) Potri.010G167200 [exp] 341 / 3e-119 AT1G69530 335 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.008G088300 [exp] 337 / 8e-118 AT1G69530 335 / 3e-117 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.013G060800 [exp] 332 / 4e-116 AT2G03090 356 / 1e-125 EXPANSIN 15, expansin A15 (.1) Potri.019G057500 [exp] 318 / 3e-110 AT2G40610 374 / 2e-132 expansin A8 (.1) Potri.013G154700 [exp] 314 / 6e-109 AT2G40610 348 / 2e-122 expansin A8 (.1) Potri.001G001100 [exp] 312 / 5e-108 AT2G03090 375 / 5e-133 EXPANSIN 15, expansin A15 (.1) Potri.016G135200 [exp] 312 / 7e-108 AT2G40610 400 / 6e-143 expansin A8 (.1) Potri.006G108000 [exp] 307 / 4e-106 AT2G40610 379 / 2e-134 expansin A8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036763 [exp] 339 / 2e-118 AT1G69530 426 / 3e-153 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10037164 [exp] 337 / 1e-117 AT1G69530 420 / 2e-150 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10033011 [exp] 335 / 1e-116 AT3G29030 389 / 2e-138 ARABIDOPSIS THALIANA EXPANSIN A5, ARABIDOPSIS THALIANA EXPANSIN 5, expansin A5 (.1) Lus10026614 [exp] 330 / 5e-115 AT1G69530 431 / 7e-155 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10008603 [exp] 316 / 2e-109 AT2G40610 397 / 2e-141 expansin A8 (.1) Lus10034227 [exp] 314 / 7e-109 AT2G40610 416 / 7e-149 expansin A8 (.1) Lus10009917 [exp] 310 / 4e-107 AT2G40610 395 / 9e-141 expansin A8 (.1) Lus10042214 [exp] 310 / 6e-107 AT2G40610 393 / 7e-140 expansin A8 (.1) Lus10029038 [exp] 293 / 1e-100 AT2G40610 418 / 6e-150 expansin A8 (.1) Lus10040286 [exp] 285 / 4e-97 AT2G39700 447 / 4e-161 expansin A4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF01357 [poplar] [flax] Expansin_C Expansin C-terminal domain CL0199 [poplar] [flax] DPBB PF03330 [poplar] [flax] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Potri.004G123200.3 pacid=42793905 polypeptide=Potri.004G123200.3.p locus=Potri.004G123200 ID=Potri.004G123200.3.v4.1 annot-version=v4.1 ATGTTCCTAAGGGGGGTTCATCTAATTTTGTGCAGGAAAATGGCTCTTCTTGGTTTTCTTTTAGTGGGGTTTCTCTCCTCTGTCTCTTCTGTTCATGGAT ATTATGGAGGTTGGATTAACGCTCATGCCACTTTCTATGGAGGTGGCGATGCTTCAGGGACAATGGGTGGGGCTTGTGGCTATGGAAATCTGTACAGCCA GGGTTATGGAACTAACACCGCAGCACTGAGCACTGCATTGTTCGACAATGGTTTGAGCTGTGGGGCTTGCTTTGAGATCAGATGTGTAAATGATCCACAG TGGTGCCTGCCTGGCGTAATTGTGGTCACCGCTACTAACTTCTGCCCTCCCGGCGGCTGGTGTGATCCTCCCAACCATCATTTTGATCTCTCTCAACCTG TCTTCCAACACATTGCCCAATATAGAGCCGGAATTGTCCCAGTAATCTACAGAAGGATAAGATGCAGGAGGAGCGGAGGCATTCGGTTCACCATCAATGG CCACTCATACTTCAATTTAGTCCTGATTACCAATGTTGGCGGTGCTGGCGATGTGCATTCAGTGGCCATCAAAGGTTCGAGAACTGGGTGGCAATCAATG TCGAGAAACTGGGGCCAAAACTGGCAGAGTAACTCTTACCTTAATGGACAGAGTCTCTCTTTTGTAGTGACGACTAGCGATGGCCGCAGTGTGGTTTCTT ACAATGTCGCCCCTGCTGGTTGGTCCTTTGGGCAGACGTATAGTGGAGGGCAGTATAGGTACTAG
AA sequence Show only first row Show all	>Potri.004G123200.3 pacid=42793905 polypeptide=Potri.004G123200.3.p locus=Potri.004G123200 ID=Potri.004G123200.3.v4.1 annot-version=v4.1 MFLRGVHLILCRKMALLGFLLVGFLSSVSSVHGYYGGWINAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFDNGLSCGACFEIRCVNDPQ WCLPGVIVVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRIRCRRSGGIRFTINGHSYFNLVLITNVGGAGDVHSVAIKGSRTGWQSM SRNWGQNWQSNSYLNGQSLSFVVTTSDGRSVVSYNVAPAGWSFGQTYSGGQYRY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Potri.004G123200 [exp]	0	1	Pt-EXP2.4
AT1G29450			SAUR-like auxin-responsive pro...		Potri.004G181500 [exp]	1.41	0.9975
AT2G04570			GDSL-like Lipase/Acylhydrolase...		Potri.014G160100 [exp]	2.64	0.9947
AT5G18020			SAUR-like auxin-responsive pro...		Potri.009G126400 [exp]	3.16	0.9956
					Potri.011G006500 [exp]	3.46	0.9960
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Potri.011G152100 [exp]	4.24	0.9949
AT1G55320		AAE18	acyl-activating enzyme 18 (.1....		Potri.001G006600 [exp]	5.47	0.9910
AT1G63710		CYP86A7	"cytochrome P450, family 86, s...		Potri.003G129100 [exp]	7.07	0.9936	Pt-CYP86.7
AT5G20260			Exostosin family protein (.1)		Potri.006G064700 [exp]	7.93	0.9831
					Potri.008G104900 [exp]	8.83	0.9824
AT5G01870			Bifunctional inhibitor/lipid-t...		Potri.016G136000 [exp]	9.38	0.9933	Pt-LTP2.2

Compare expression of checked genes

Potri.004G123200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.