Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15270 596 / 0 RNA-binding KH domain-containing protein (.1.2) AT1G14170 369 / 1e-122 RNA-binding KH domain-containing protein (.1.2.3) AT5G46190 193 / 5e-54 RNA-binding KH domain-containing protein (.1) AT1G51580 164 / 8e-44 RNA-binding KH domain-containing protein (.1) AT4G18375 162 / 2e-43 RNA-binding KH domain-containing protein (.1.2) AT5G53060 151 / 5e-39 RNA-binding KH domain-containing protein (.1.2) AT2G03110 108 / 9e-28 RNA binding;nucleic acid binding (.1) AT5G64390 101 / 3e-22 HEN4 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) AT3G04610 95 / 2e-20 FLK flowering locus KH domain, RNA-binding KH domain-containing protein (.1) AT2G22600 92 / 1e-19 RNA-binding KH domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G085500 [exp] 919 / 0 AT5G15270 592 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.010G167100 [exp] 491 / 1e-169 AT5G15270 455 / 3e-155 RNA-binding KH domain-containing protein (.1.2) Potri.008G088600 [exp] 491 / 2e-169 AT5G15270 454 / 5e-155 RNA-binding KH domain-containing protein (.1.2) Potri.017G114400 [exp] 232 / 1e-67 AT5G15270 259 / 8e-78 RNA-binding KH domain-containing protein (.1.2) Potri.004G066100 [exp] 199 / 3e-56 AT4G18375 558 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.011G082500 [exp] 182 / 4e-50 AT5G46190 525 / 5e-180 RNA-binding KH domain-containing protein (.1) Potri.002G112200 [exp] 178 / 2e-48 AT5G53060 243 / 7e-71 RNA-binding KH domain-containing protein (.1.2) Potri.010G251700 [exp] 169 / 2e-45 AT1G51580 434 / 9e-145 RNA-binding KH domain-containing protein (.1) Potri.012G017200 [exp] 166 / 7e-44 AT5G53060 656 / 0.0 RNA-binding KH domain-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030689 [exp] 691 / 0 AT5G15270 638 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10005232 [exp] 688 / 0 AT5G15270 634 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10037163 [exp] 457 / 1e-154 AT5G15270 491 / 1e-167 RNA-binding KH domain-containing protein (.1.2) Lus10036767 [exp] 449 / 3e-152 AT5G15270 483 / 2e-165 RNA-binding KH domain-containing protein (.1.2) Lus10023300 [exp] 204 / 9e-58 AT5G46190 643 / 0.0 RNA-binding KH domain-containing protein (.1) Lus10038509 [exp] 204 / 1e-57 AT5G46190 653 / 0.0 RNA-binding KH domain-containing protein (.1) Lus10033557 [exp] 170 / 1e-47 AT5G15270 201 / 3e-59 RNA-binding KH domain-containing protein (.1.2) Lus10017596 [exp] 140 / 9e-37 AT5G15270 169 / 2e-47 RNA-binding KH domain-containing protein (.1.2) Lus10028237 [exp] 139 / 1e-34 AT5G64390 243 / 8e-71 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10007236 [exp] 137 / 8e-34 AT5G64390 249 / 6e-73 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [poplar] [flax] KH PF00013 [poplar] [flax] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Potri.004G123400.5 pacid=42794070 polypeptide=Potri.004G123400.5.p locus=Potri.004G123400 ID=Potri.004G123400.5.v4.1 annot-version=v4.1 ATGGCGGGGCAAAGGAATAATTACAGAAAGCGGTCTCATTCGCAGTCAGATTATGATATTGGGGCAAATAAGAGGAGAAATTCTGGTGACGATAGAGAAC GTTATGTTATTGATTCACAGGATACAGTATATCGTTATTTGTGCCCGGCTATGAAGATTGGAAGCATAATAGGAAGGGGAGGGGAGATTGTTAAGCAATT AAGGATAGACACCAAGTCAAAGATTAGGGTTGGTGAAACAGTGCCGGGTTGTGAAGAACGTGTTGTTACCATGTATAGTCCGAGTGATGAGACTAATGAA TATGAAGATAGTGGTAATTATGTTTCTCCTGCTCAGGATGCTCTGTTCAGGGTACATGATAAAGTTATAACAGAGGATTTGCAAGTTGACGAGGACTCTG AAGAAAGTCAACAAGTCACTGCTAAGCTTCTTGTACCTTCTGATCAGATAGGATGTATTATTGGGAAAGGTGGGCAGATAGTTCAGAACATACGTAGTGA GACTGGTGCAGTGATCCGCATTCTTAAGGATGAGCATTTGCCTCCTTGTGCTTTAAGCTCAGATGAGCTTGTACAGATTTCTGGTGAAGCTGCAGTTGTC AAAAAGGCTTTATATCAAATAGCATCTCGCCTTCACGATAATCCATCACGGTCTCAGCACTTACTTGTTTCTGCTGTTCCAAATGTGTACCCTGCTGTTG GTTCACTGGTTGGTCCATCTGCAGCTGCCCCAATTGTTGGAATTGCTCCTCTGATGGGTCCTTATGGCAGTTTCAAAGGTGACACTGGAGACTGGTCCCG CTCGTTGTATTCAGCTCCAAGAGATGAACTTGCTTCAAAAGAATTTTCTCTTCGTATGGTTTGTCCAACTGCAAATATTGGTGCTGTAATTGGGAAAGGT GGTACCATAATCAATCAGATCAGACAGGAGTCTGGAGCAACAATCAAAGTTGATAGTTCAGCTTCTGAAGGAGATGATTGCTTGATAACTATTTCAGCTA AGGAGATATGTGATGACCAGTATTCTCCAACAATAGAAGCAGCCTTACGTTTGCAACCTAGATGTAGTGAGAAAATGGAAAGAGATTCAGGTCTTTTCTC ATTTACTACCCGTCTACTTGTTCCCTCCTCTCATATTGGTTGCCTTCTTGGTAAAGGAGGACTTATTATAGATGAGATGAGGAAACTTACCAAAGCTATT ATTCGGATACCTAGAAAGGACAAGCTTCCTAAAACTGCCTTGGATGATGATGAGATGGTGCAGATTTCAGGAGACCTGGACATTGCCAAGGATGCTCTCA TACAAATAAGTCGACGGTTAAGAGCAAATGCTTTTGATAGGGAAGGTTTAATGTCTGCAATTCTACCAGTTTTTCCATACCTTCCTGTCTCAGCAGAAGG TTTGGAGGGTCGACATTATGACAGTAGAGATGATAAAAGACATGGACGTGGAAATACTTATGCTGGTGGTTATGGCGCAAGTGATTATGCTGTTGGTGAC AGTTATGGTAGCTATAGAAGCACACAGATTAGTGCTAGTGGAGGTCCTTTTGGAGCCTATGGAAGCTATTCTTCAGGACGCATTGGTACTTCTGGGTTAT CTGGCCAGGCCCCTGTTTCTCGACGCAAAAGTTATTACTAG
AA sequence Show only first row Show all	>Potri.004G123400.5 pacid=42794070 polypeptide=Potri.004G123400.5.p locus=Potri.004G123400 ID=Potri.004G123400.5.v4.1 annot-version=v4.1 MAGQRNNYRKRSHSQSDYDIGANKRRNSGDDRERYVIDSQDTVYRYLCPAMKIGSIIGRGGEIVKQLRIDTKSKIRVGETVPGCEERVVTMYSPSDETNE YEDSGNYVSPAQDALFRVHDKVITEDLQVDEDSEESQQVTAKLLVPSDQIGCIIGKGGQIVQNIRSETGAVIRILKDEHLPPCALSSDELVQISGEAAVV KKALYQIASRLHDNPSRSQHLLVSAVPNVYPAVGSLVGPSAAAPIVGIAPLMGPYGSFKGDTGDWSRSLYSAPRDELASKEFSLRMVCPTANIGAVIGKG GTIINQIRQESGATIKVDSSASEGDDCLITISAKEICDDQYSPTIEAALRLQPRCSEKMERDSGLFSFTTRLLVPSSHIGCLLGKGGLIIDEMRKLTKAI IRIPRKDKLPKTALDDDEMVQISGDLDIAKDALIQISRRLRANAFDREGLMSAILPVFPYLPVSAEGLEGRHYDSRDDKRHGRGNTYAGGYGASDYAVGD SYGSYRSTQISASGGPFGAYGSYSSGRIGTSGLSGQAPVSRRKSYY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15270			RNA-binding KH domain-containi...		Potri.004G123400 [exp]	0	1
AT3G53710		AGD6	ARF-GAP domain 6 (.1.2)		Potri.016G095100 [exp]	3.16	0.8743
AT4G03020			transducin family protein / WD...		Potri.008G197200 [exp]	4.24	0.8626
AT4G07950			DNA-directed RNA polymerase, s...		Potri.012G015900 [exp]	4.89	0.8779
AT3G59300			Pentatricopeptide repeat (PPR)...		Potri.014G151700 [exp]	6.48	0.8607
AT1G09230			RNA-binding (RRM/RBD/RNP motif...		Potri.019G031700 [exp]	9.00	0.8491
AT3G53810			Concanavalin A-like lectin pro...		Potri.009G035800 [exp]	9.48	0.8188
AT5G08110			nucleic acid binding;ATP-depen...		Potri.012G063000 [exp]	9.59	0.8116
AT3G06540		AthREP	Rab escort protein (.1)		Potri.005G030000 [exp]	10.77	0.8042
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Potri.016G089000 [exp]	12.40	0.8469
AT3G51370			Protein phosphatase 2C family ...		Potri.007G061100 [exp]	14.28	0.8369

Compare expression of checked genes

Potri.004G123400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.