Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02100 439 / 1e-151 UDP-Glycosyltransferase superfamily protein (.1) AT1G22400 262 / 2e-82 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G22370 257 / 2e-80 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT1G22380 257 / 2e-80 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G22340 253 / 8e-79 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT1G78270 252 / 2e-78 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT1G22360 251 / 6e-78 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT2G36970 241 / 3e-74 UDP-Glycosyltransferase superfamily protein (.1) AT3G22250 226 / 1e-68 UDP-Glycosyltransferase superfamily protein (.1) AT1G05675 214 / 3e-64 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G091500 [exp] 790 / 0 AT3G02100 454 / 9e-158 UDP-Glycosyltransferase superfamily protein (.1) Potri.004G119700 [exp] 571 / 0 AT3G02100 457 / 8e-159 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G084900 [exp] 404 / 6e-138 AT3G02100 307 / 9e-100 UDP-Glycosyltransferase superfamily protein (.1) Potri.013G022800 [exp] 360 / 2e-120 AT3G02100 302 / 9e-98 UDP-Glycosyltransferase superfamily protein (.1) Potri.007G095000 [exp] 265 / 1e-83 AT1G22340 543 / 0.0 UDP-glucosyl transferase 85A7 (.1) Potri.005G073800 [exp] 263 / 7e-83 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.005G073766 [exp] 263 / 7e-83 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.002G098400 [exp] 258 / 7e-81 AT1G22360 640 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.016G022000 [exp] 257 / 2e-80 AT1G22360 499 / 1e-174 UDP-glucosyl transferase 85A2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015745 [exp] 364 / 4e-122 AT3G02100 288 / 1e-92 UDP-Glycosyltransferase superfamily protein (.1) Lus10015746 [exp] 360 / 7e-121 AT3G02100 300 / 4e-97 UDP-Glycosyltransferase superfamily protein (.1) Lus10015751 [exp] 353 / 1e-117 AT3G02100 281 / 7e-90 UDP-Glycosyltransferase superfamily protein (.1) Lus10003455 [exp] 352 / 2e-117 AT3G02100 291 / 1e-93 UDP-Glycosyltransferase superfamily protein (.1) Lus10015749 [exp] 350 / 2e-116 AT3G02100 274 / 6e-87 UDP-Glycosyltransferase superfamily protein (.1) Lus10003454 [exp] 345 / 9e-115 AT3G02100 268 / 1e-84 UDP-Glycosyltransferase superfamily protein (.1) Lus10003453 [exp] 341 / 3e-113 AT3G02100 276 / 6e-88 UDP-Glycosyltransferase superfamily protein (.1) Lus10034699 [exp] 338 / 8e-112 AT3G02100 285 / 2e-91 UDP-Glycosyltransferase superfamily protein (.1) Lus10015744 [exp] 336 / 3e-111 AT3G02100 271 / 6e-86 UDP-Glycosyltransferase superfamily protein (.1) Lus10015750 [exp] 329 / 2e-108 AT3G02100 298 / 2e-96 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.004G123500.1 pacid=42796229 polypeptide=Potri.004G123500.1.p locus=Potri.004G123500 ID=Potri.004G123500.1.v4.1 annot-version=v4.1 ATGGGCAAGCCACATATTGTAGTCATACCTTATCCAGCACAGGGCCATGTGATTCCCTTCATGGAACTCTCACAATGCCTGGTAAAACAGGGGTTCAAAA TCACATTTGTGAGCACAGAGTATAATCACAAGAGGGTCTTGAAAGCATTGAGGGGGAACATTAATCTTGGGGGTGAAATTAGTCTTGTTTCGCTTCCAGA TGGGCTAGAAGCTTGTGGGGATAGAAATGAACTGGGAAAGTTGTCTAAAGCAATTTTTCAGGTCATGCCAGGGAAGCTAGAAGAGCTCATAGACAGGATC AATATGACAGAAGAAGAGAAAATTACCTGTATAATTACTGATTGGAGCATGGGATGGGCTCTTGAAGTGGCAGAGAAGATGAAAATCCGACGTGCTATCT ACTGGCCTGCTGCAGCTGCCATACTATGCTCACTGATCAGTATTCCAAAGCTACTAAGTGATGGAATCATTGACGGCGATGGAACTCCGCTAAATAACCA GATGATTCAGTTGGCACCAACAATGCCTGCAATGGACACTGCAAATTTTGTATGGGCCTGCCTTGGTGACTTTACCACACAGAAAATTATATTTGATCTC ATGGTTAAAACCAATGAGGCAGCGAAAATGGCAGACAGAATAATTTCTAACTCGGCTTATGACCTTGAGCCTGGAGCTTTTTCCTTGGCCCCAAACATTC TACCTATAGGACCACTTCTGGCAAGCAATCGGCTAGGAGATCAGTTGGGATACTTCTGGCCAGAAGACTCAACATGTTTGAAGTGGCTAGACCAGCAGCC GCCCAAGTCAGTTGTTTACGTCGCATTTGGTAGCTTTACTGTTTTCGACAAAACACAATTCCAAGAGTTAGCTCAGGGTCTTGAACTATCCAGTAGATCA TTCTTGTGGGTTGTCAGGCCAGATATTACCACTGAAACCAACGATGCCTATCCAGAAGGATTTCAAGAGAGAGTAGCCACTCGTGGAAGGATGGTTGGCT GGGCTCCTCAACAGAAAGTCCTTAGTCACCCTTCTATCTCCTGCTTCTTGAGCCACTGTGGTTGGAACTCCACCATGGAGGGTGTAAGCAATGGGGTCCC TTTCTTGTGCTGGCCATATTTTGCTGACCAATTCCTTAATGAGACCTACATTTGTGATGTTTGGAAGGTGGGATTGAAGTTTGACAAAAACAAATGTGGG ATCATCACAAGGGAAGAAATAAAGAATAAGGTGGAGACAGTTATCAGTGATGAAAAAATCAAGGCAAGAGCTGCAGAACTCAAAAGATTGGCCATGCAGA ATGTTGGAGAAGCTGGTTATTCAAGCGAGAATTTCAAGAACTTCATTGAATGGATTAAGTCATGA
AA sequence Show only first row Show all	>Potri.004G123500.1 pacid=42796229 polypeptide=Potri.004G123500.1.p locus=Potri.004G123500 ID=Potri.004G123500.1.v4.1 annot-version=v4.1 MGKPHIVVIPYPAQGHVIPFMELSQCLVKQGFKITFVSTEYNHKRVLKALRGNINLGGEISLVSLPDGLEACGDRNELGKLSKAIFQVMPGKLEELIDRI NMTEEEKITCIITDWSMGWALEVAEKMKIRRAIYWPAAAAILCSLISIPKLLSDGIIDGDGTPLNNQMIQLAPTMPAMDTANFVWACLGDFTTQKIIFDL MVKTNEAAKMADRIISNSAYDLEPGAFSLAPNILPIGPLLASNRLGDQLGYFWPEDSTCLKWLDQQPPKSVVYVAFGSFTVFDKTQFQELAQGLELSSRS FLWVVRPDITTETNDAYPEGFQERVATRGRMVGWAPQQKVLSHPSISCFLSHCGWNSTMEGVSNGVPFLCWPYFADQFLNETYICDVWKVGLKFDKNKCG IITREEIKNKVETVISDEKIKARAAELKRLAMQNVGEAGYSSENFKNFIEWIKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02100			UDP-Glycosyltransferase superf...		Potri.004G123500 [exp]	0	1
AT5G52440		HCF106	HIGH CHLOROPHYLL FLUORESCENCE ...		Potri.012G144300 [exp]	3.00	0.9743	Pt-HCF106.2
AT5G22620			phosphoglycerate/bisphosphogly...		Potri.011G052200 [exp]	3.74	0.9780
AT4G03520		ATHM2	Thioredoxin superfamily protei...		Potri.005G058400 [exp]	4.89	0.9747	PtrTrxm3
AT1G03630		PORC ,POR C	protochlorophyllide oxidoreduc...		Potri.013G135500 [exp]	8.66	0.9723	Pt-POR.2
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.011G124184 [exp]	10.09	0.9712
AT1G12250			Pentapeptide repeat-containing...		Potri.003G112900 [exp]	10.95	0.9654
AT3G09210		PTAC13	plastid transcriptionally acti...		Potri.006G094800 [exp]	10.95	0.9739
AT4G29060		EMB2726	embryo defective 2726, elongat...		Potri.018G083900 [exp]	16.73	0.9664
AT5G21430		NdhU, CRRL	NADH dehydrogenase-like comple...		Potri.006G221900 [exp]	16.91	0.9634
AT1G03600		PSB27	photosystem II family protein ...		Potri.002G056300 [exp]	18.57	0.9604

Compare expression of checked genes

Potri.004G123500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.