Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28720 852 / 0 unknown protein AT5G58100 81 / 1e-15 unknown protein AT4G16180 60 / 4e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G078700 [exp] 1059 / 0 AT3G28720 823 / 0.0 unknown protein Potri.006G080700 [exp] 80 / 3e-15 AT5G58100 1315 / 0.0 unknown protein Potri.018G150600 [exp] 77 / 2e-14 AT5G58100 1362 / 0.0 unknown protein Potri.010G146800 [exp] 55 / 2e-07 AT4G16180 1235 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015362 [exp] 707 / 0 AT3G28720 628 / 0.0 unknown protein Lus10033020 [exp] 622 / 0 AT3G28720 599 / 0.0 unknown protein Lus10033019 [exp] 506 / 6e-177 AT3G28720 450 / 2e-155 unknown protein Lus10001710 [exp] 130 / 7e-34 AT3G28720 149 / 4e-41 unknown protein Lus10027581 [exp] 71 / 2e-12 AT5G58100 1451 / 0.0 unknown protein Lus10008552 [exp] 71 / 2e-12 AT5G58100 886 / 0.0 unknown protein Lus10017062 [exp] 52 / 1e-06 AT4G16180 1226 / 0.0 unknown protein Lus10037780 [exp] 52 / 2e-06 AT4G16180 1215 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G123900.1 pacid=42796221 polypeptide=Potri.004G123900.1.p locus=Potri.004G123900 ID=Potri.004G123900.1.v4.1 annot-version=v4.1 ATGCCCACCACCACCACCACCACCACCCTCCTCCTCCTCCTCTTCCTCCTCCTCACCACCACAACTCCCTCCCCAATCCCAGGCCTAGACTCTTTCCTCT CTCACCAATCATCTCTAGATCCTCTTTCCACCAACGATTCCTTCCCCTCCCTCCCTCCCTCCCTCAGAAAATCCCTCTCGCTCGCTTCCCCTCCCCCCCA CATCCCTTCCTTAATCTCCTCCCTCCTCTCCCTCACCGTCCAACTTTCGCTCAACATCCGTCTCGTCGGCCCCTCCTTCCCCTCCTCCTCCTCCTCCCTC CTCTATTCCTTCCTCTCGAACGCCAACATCGCCGACCGCTTCCACGTCATTACCACCGACCCCATCCCTTCCCAAAACTCCCACCATCTTTCCATCAAGC ACTCCCCCCACCTTGACATTTCCCACGCGAGCTCCACCCTCTCATCTCGCCTTTCCGAGGCCCTTAATTCTGCAGTTTCCGAGACAACATCTTCCCTCCG AACCCCTCTCCTTTCCATCCCTTACGACACAGTTGACCGGATAATCAAGCAAGATTTTGATAGAGAAAAGCCTGTGCATGGGGTTTATGTTTATTTGATT AATTTGGGTTCGCAACCCAAGAACTATGCGTATAGTTATTCGGCTGGAGACTCCTCTCCTGGCCTCACTAAATGTTTAGGAACTATTTGGACTGGTAAAG AGAGGTATCTTTGGATTGATCTATCTGCTGGCCCTGTTGATTATGGCCCGGCTTTATCTGGAGATGGGGTTTTGCCTAGAGGTGAATTTCACCCTCTTGC GGCAATGCACGGGCGACCAAAGTCGCAAAAGGCGTTGTTAGCGGACTTGGCGTCGTTGATTTGGAGTGCTTATCAGGTATTACTTGTGCCCTCTTTGAGA ATTCCTGTGCATTTTGAGAATTCTTTGATAGTTGAGTTTATACATATTTATGGGTCTGAAAGTGCTAAGGATTTGAGTGGGTTTGATTGGAAGGAGATTG AGAGGACGTTTATGGATGAGGCTAATGAAGGTGGGTTGTTGTTGAGGAATCAGAATTTGGCGTTTAGGAATTATGAAGTGAATTATGATCAGTGTCCCAT TTGTTCGTTTGCGATTTCCAGGTCAATTAATTCCTATACTTCGAGGTTCTTGTTTGAAAATTATACTTTAATTGTCAGTGAGTATTTGGACTCGAAGAGA TTGCATCAGATATTATCTGATTCCGCTGAGGAGTTTAGGAGGATTGCAGGCATCCCTGAGGAGGATTTCAGTAGAGTGCTGCCTGTTTATGTGTTTGATT TGGATTACAATATGATGTTGATGCTTGATCGGTATCATCAATCTGTTGCGTTTAGGGATATGATTATTGCAGTGAGGACAAAGACTACACAGACTGTGAG TGATTATAGCTGCAATGGTCGTCACATGTTTACGCATACTAGGATGCTTGAGAGACCGCTTGTTGGTTCTATTCTACAGAGTATGTGGGGAGTGTCACCA ACCCATTTGTCATGGAGTCCAAGGCATAATAATACTTTGGTGGATTATACATGGAGTGTTGGACAAACTCCATTTGGGCCTTTCTCAGAGATTTCATCTT TGTCGTTTGTGCAGAAAGATTCAGCTCGTAGAAATGTGCTGTTGACGTTGTTAAATTACAGTATAACTAGTGTTATTGATGTTCTTGAATCGATTGCGGC ACATGGTGGGGACAGGAATCTCCTTAAACAGAATCGGCATATTGAGTTTGTTCAGAGATGGAACCTGTTCAAGTACAAGCTGGACAAAGCAATTTCTGCA ATATCACATTTGGACTTTGAAATGGCTTTATATTATCTGCGGTCCTCTGACCATGATATGTATGCCATTCACTCTCTGGTCTATCATGCATCCCAGGAAT TGGAGGCGTCACTTGTTTGTTTTAAGGACCCACCATTTCCATGGGGTTCAGTGTCTATGTCCGCTGTAGGGGTCTTTGCTCTCTTTTATGTTTATTCTAA AAGAGAGAGACTTTTTAGAAATAAAAGAAAGCAGTTTTGA
AA sequence Show only first row Show all	>Potri.004G123900.1 pacid=42796221 polypeptide=Potri.004G123900.1.p locus=Potri.004G123900 ID=Potri.004G123900.1.v4.1 annot-version=v4.1 MPTTTTTTTLLLLLFLLLTTTTPSPIPGLDSFLSHQSSLDPLSTNDSFPSLPPSLRKSLSLASPPPHIPSLISSLLSLTVQLSLNIRLVGPSFPSSSSSL LYSFLSNANIADRFHVITTDPIPSQNSHHLSIKHSPHLDISHASSTLSSRLSEALNSAVSETTSSLRTPLLSIPYDTVDRIIKQDFDREKPVHGVYVYLI NLGSQPKNYAYSYSAGDSSPGLTKCLGTIWTGKERYLWIDLSAGPVDYGPALSGDGVLPRGEFHPLAAMHGRPKSQKALLADLASLIWSAYQVLLVPSLR IPVHFENSLIVEFIHIYGSESAKDLSGFDWKEIERTFMDEANEGGLLLRNQNLAFRNYEVNYDQCPICSFAISRSINSYTSRFLFENYTLIVSEYLDSKR LHQILSDSAEEFRRIAGIPEEDFSRVLPVYVFDLDYNMMLMLDRYHQSVAFRDMIIAVRTKTTQTVSDYSCNGRHMFTHTRMLERPLVGSILQSMWGVSP THLSWSPRHNNTLVDYTWSVGQTPFGPFSEISSLSFVQKDSARRNVLLTLLNYSITSVIDVLESIAAHGGDRNLLKQNRHIEFVQRWNLFKYKLDKAISA ISHLDFEMALYYLRSSDHDMYAIHSLVYHASQELEASLVCFKDPPFPWGSVSMSAVGVFALFYVYSKRERLFRNKRKQF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G28720			unknown protein		Potri.004G123900 [exp]	0	1
AT3G18270		CYP77A5P	"cytochrome P450, family 77, s...		Potri.015G044400 [exp]	2.00	0.7707
AT5G13390		NEF1	no exine formation 1 (.1)		Potri.003G161400 [exp]	5.00	0.6734	Pt-NEF1.1
AT5G13890			Family of unknown function (DU...		Potri.002G237200 [exp]	5.29	0.7159
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Potri.002G142700 [exp]	7.41	0.6928	BSTCP.2
AT1G05520			Sec23/Sec24 protein transport ...		Potri.001G307400 [exp]	7.93	0.7062
AT4G36020		CSDP1	cold shock domain protein 1 (....		Potri.007G057100 [exp]	10.58	0.6980
AT4G08960			phosphotyrosyl phosphatase act...		Potri.005G162900 [exp]	14.07	0.6763
AT1G51745			Tudor/PWWP/MBT superfamily pro...		Potri.003G045600 [exp]	16.27	0.6358
AT2G23140			RING/U-box superfamily protein...		Potri.005G144700 [exp]	22.22	0.6726
					Potri.018G035750 [exp]	34.07	0.6724

Compare expression of checked genes

Potri.004G123900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.