Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ATHMG.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28730 875 / 0 NFD, SSRP1, ATHMG NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D, high mobility group (.1) AT4G23800 47 / 5e-05 3xHMG-box2, AT4G23800 3xHigh Mobility Group-box2, HMG (high mobility group) box protein (.1), HMG (high mobility group) box protein (.2) AT4G11080 46 / 6e-05 3xHMG-box1 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) AT3G51880 42 / 0.0004 AtHMGB1, NFD1, HMGB1 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) AT1G04880 42 / 0.0008 ARID HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G078500 [exp] 1152 / 0 AT3G28730 836 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D, high mobility group (.1) Potri.003G138000 [exp] 45 / 0.0002 AT4G11080 302 / 1e-97 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Potri.005G246700 [exp] 43 / 0.0004 AT1G76110 350 / 2e-120 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Potri.001G093700 [exp] 43 / 0.0006 AT4G11080 325 / 2e-106 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018073 [exp] 861 / 0 AT3G28730 850 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D, high mobility group (.1) Lus10042065 [exp] 848 / 0 AT3G28730 843 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D, high mobility group (.1) Lus10023090 [exp] 49 / 5e-06 AT4G23800 195 / 1e-59 3xHigh Mobility Group-box2, HMG (high mobility group) box protein (.1), HMG (high mobility group) box protein (.2) Lus10033951 [exp] 48 / 2e-05 AT4G11080 214 / 5e-65 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Lus10032379 [exp] 47 / 4e-05 AT4G11080 481 / 1e-167 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Lus10001909 [exp] 45 / 0.0002 AT4G11080 496 / 2e-173 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Lus10003904 [exp] 43 / 0.0008 AT4G11080 506 / 2e-177 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0114 [poplar] [flax] HMG-box PF00505 [poplar] [flax] HMG_box HMG (high mobility group) box CL0266 [poplar] [flax] PH PF03531 [poplar] [flax] SSrecog Structure-specific recognition protein (SSRP1) CL0266 [poplar] [flax] PH PF08512 [poplar] [flax] Rtt106 Histone chaperone Rttp106-like
Representative CDS sequence Show only first row Show all	>Potri.004G124000.2 pacid=42794426 polypeptide=Potri.004G124000.2.p locus=Potri.004G124000 ID=Potri.004G124000.2.v4.1 annot-version=v4.1 ATGACGGACGGTCATCTCTTCAATAATATCTTTCTCGGAGGCCGTGGAGGCACTAACCCTGGACACCTTAAGATATCTCCAGGGGGGATTCTATGGAAGA AACAAGGGGGTGGTAAGGCAGTTGAAGTTGATAGAGCTGACATTCTTGGAGTGACATGGATGAAGGTCCCAAGGACAAATCAACTCAGTGTTCTAATTAA AGGTGGACCTTGGTACAAGTTTACTGGATTTCGTGATCAGGACTTATCTACCTTGACCAATTTTTTCCAAAGCCATGGAATAACACCAGAAGAGAAGCAG CTATCTGTCAGTGGTCGTAACTGGGGAGAAGTTGACTTAAATGGAAATATGCTTACATTTTTGGTTGGTTCGAAGCAAGCGTTTGAGGTATCTTTAGCAG ATGTTTCACAAACACAGATGCAAGGGAAAAATGATGTCATCTTGGAGTTCCATGTGGATGATACTACTGGAGCAAATGAGAAAGATTCGTTGATGGAGCT AAGTTTTCACATACCTAATAACAATACCCAATATATTGGTGATGAAAATCATCCTCCTGCTCAGGTTTTCCGTGACCTAATTGTGCAAAAGGCAGATGTT GGTGCTGGAGGTGAAGAAGCTGTTGTTACATTTGAGGGCATTGCAATCCTCACACCAAGGGGTCGGTACAGTGTTGAACTTCATTTGTCTTTCCTGCGGC TTCAAGGACAGGCTAATGATTTCAAAATCCAGTATAGCAGTGTTGTCCGCCTCTTTTTGCTTCCAAAGTTTAACCAGCCACACACCTTTGTTGTCGTGAC TCTTGATCCACCTATCCGTAAAGGGCAAACTCTATACCCGCATATCGTGTTGCAGTTCGACACTGACTTTGTAGTTCAAAGCAACTTGTCAATGAGTGAA GATCTTTTGTACACAAAGTACAAGGACAAGTTGGAGCCATCTTACAAGGGACTTATTCATGAAGTGTTCACCACTATATTGCGTGGATTGTCTAGTGCCA AAGTTACTAGACCAGGAAAATTCCGTAGCTGTCAAGATGGCTATGCTGTGAAGTCATCGCTGAAAGCTGAAGATGGTGTCCTGTACCCACTTGAGAAGAG CTTCTTCTTCTTACCCAAACCTCCAACCCTCATTCTTCATGAGGAGATTGACTATGTTGAATTTGAGAGGCATGCAGCTGGTGGCTCAAATATGCATTAC TTTGATCTTCTTATAAGACTTAAAACGGAACAAGAACATCTTTTCCGTAACATCCAGAGGAATGAATATCATAATCTTTTTGACTTCATAAGTGGGAAGG GCATGAAAATTATGAACCTGGGAGATATGCAGACCGCAAAAGGAGTGGCTGCTGTTCTTCAGAATGATGATGATGATGCTGTTGATCCACATCTTGCACG CATTAGAAATGAAGCTGGTGATGACGAGAGCGATGAAGAGGATGAAGATTTTGTCCTCGGGAAGGATGATGGAGGTTCTCCTACTGATGATTCTGGAGAG GAAGAATCTGATGCCAGTGAAAGTGGAGATGAGAAAGAGAACCCTGGAAAAAAGGATTTTAAAAGGGAGGTTTCATCTTCCAAGGCTGTTACAAAGAGGA AAAGCAGAGATGGAGAGGAAAGCCAAAAGAAGAGAAAACCAAAAAAGAAGAAGGATCCCAATGCACCGAAGAGATCAAAATCTGCCTACGTGTTCTTCTC GCAAATGGAAAGGGAGAATGTGAAGAAAAGTAACCCAGGAATTGTGTTTGGGGAGATTACAAAAGCACTTGCGGACAAGTGGAATGCTATGTCAGCGGAG GAGAAAGAACCGTACGAAGAAATGGCTCGAGATGATAAACAACGGTATAAATCGCAAGTCAATGATTACAAGAACAAGAACCCACAGCCAATGATGGTAG ACTCTGGATACGAGTCTGACAGTTGA
AA sequence Show only first row Show all	>Potri.004G124000.2 pacid=42794426 polypeptide=Potri.004G124000.2.p locus=Potri.004G124000 ID=Potri.004G124000.2.v4.1 annot-version=v4.1 MTDGHLFNNIFLGGRGGTNPGHLKISPGGILWKKQGGGKAVEVDRADILGVTWMKVPRTNQLSVLIKGGPWYKFTGFRDQDLSTLTNFFQSHGITPEEKQ LSVSGRNWGEVDLNGNMLTFLVGSKQAFEVSLADVSQTQMQGKNDVILEFHVDDTTGANEKDSLMELSFHIPNNNTQYIGDENHPPAQVFRDLIVQKADV GAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKFNQPHTFVVVTLDPPIRKGQTLYPHIVLQFDTDFVVQSNLSMSE DLLYTKYKDKLEPSYKGLIHEVFTTILRGLSSAKVTRPGKFRSCQDGYAVKSSLKAEDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHY FDLLIRLKTEQEHLFRNIQRNEYHNLFDFISGKGMKIMNLGDMQTAKGVAAVLQNDDDDAVDPHLARIRNEAGDDESDEEDEDFVLGKDDGGSPTDDSGE EESDASESGDEKENPGKKDFKREVSSSKAVTKRKSRDGEESQKKRKPKKKKDPNAPKRSKSAYVFFSQMERENVKKSNPGIVFGEITKALADKWNAMSAE EKEPYEEMARDDKQRYKSQVNDYKNKNPQPMMVDSGYESDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G28730		NFD, SSRP1, ATH...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.004G124000 [exp]	0	1	ATHMG.2
AT5G49880			mitotic checkpoint family prot...		Potri.003G000900 [exp]	1.00	0.8275
AT3G13670			Protein kinase family protein ...		Potri.003G215700 [exp]	4.00	0.7617
AT3G21175	GATA	GATA24, TIFY2B,...	ZIM LIKE 1, GATA TRANSCRIPTION...		Potri.017G042200 [exp]	4.89	0.7332
AT3G03940			Protein kinase family protein ...		Potri.019G034500 [exp]	8.12	0.6725
AT1G15280			CASC3/Barentsz eIF4AIII bindin...		Potri.003G056500 [exp]	9.79	0.7782
AT2G32910			DCD (Development and Cell Deat...		Potri.005G042700 [exp]	15.29	0.7832
AT1G03350			BSD domain-containing protein ...		Potri.015G050700 [exp]	16.88	0.7463
AT2G35800		SAMTL	S-adenosyl methionine transpor...		Potri.010G217900 [exp]	21.56	0.7084
AT1G80245			Spc97 / Spc98 family of spindl...		Potri.003G149100 [exp]	22.04	0.7218
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Potri.009G163400 [exp]	23.02	0.7215

Compare expression of checked genes

Potri.004G124000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.