Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15110 533 / 0 Pectate lyase family protein (.1) AT3G01270 517 / 0 Pectate lyase family protein (.1) AT1G14420 493 / 1e-172 AT59 Pectate lyase family protein (.1) AT2G02720 480 / 1e-167 Pectate lyase family protein (.1) AT4G13710 447 / 2e-154 Pectin lyase-like superfamily protein (.1.2) AT3G24670 430 / 4e-148 Pectin lyase-like superfamily protein (.1) AT1G67750 428 / 5e-148 Pectate lyase family protein (.1) AT5G48900 429 / 6e-148 Pectin lyase-like superfamily protein (.1) AT4G13210 425 / 2e-146 Pectin lyase-like superfamily protein (.1.2) AT3G07010 424 / 5e-146 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G078400 [exp] 783 / 0 AT5G15110 481 / 7e-168 Pectate lyase family protein (.1) Potri.008G148800 [exp] 558 / 0 AT5G15110 523 / 0.0 Pectate lyase family protein (.1) Potri.015G064700 [exp] 558 / 0 AT5G15110 511 / 5e-180 Pectate lyase family protein (.1) Potri.003G175900 [exp] 433 / 3e-149 AT4G13710 681 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.001G052300 [exp] 431 / 1e-148 AT4G13710 696 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.010G051800 [exp] 429 / 1e-147 AT1G67750 645 / 0.0 Pectate lyase family protein (.1) Potri.001G339500 [exp] 426 / 3e-147 AT4G24780 617 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.015G087800 [exp] 426 / 6e-147 AT5G63180 657 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G182200 [exp] 425 / 9e-147 AT1G67750 671 / 0.0 Pectate lyase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005254 [exp] 629 / 0 AT3G01270 558 / 0.0 Pectate lyase family protein (.1) Lus10033018 [exp] 622 / 0 AT5G15110 561 / 0.0 Pectate lyase family protein (.1) Lus10030670 [exp] 610 / 0 AT3G01270 558 / 0.0 Pectate lyase family protein (.1) Lus10036721 [exp] 518 / 0 AT3G01270 565 / 0.0 Pectate lyase family protein (.1) Lus10037207 [exp] 513 / 0 AT3G01270 561 / 0.0 Pectate lyase family protein (.1) Lus10023623 [exp] 498 / 5e-175 AT3G01270 517 / 0.0 Pectate lyase family protein (.1) Lus10030791 [exp] 489 / 4e-171 AT5G15110 533 / 0.0 Pectate lyase family protein (.1) Lus10015359 [exp] 429 / 2e-150 AT3G01270 396 / 2e-137 Pectate lyase family protein (.1) Lus10036946 [exp] 429 / 4e-148 AT5G63180 627 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10033037 [exp] 426 / 1e-146 AT5G63180 671 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF00544 [poplar] [flax] Pectate_lyase_4 Pectate lyase CL0268 [poplar] [flax] PF04431 [poplar] [flax] Pec_lyase_N Pectate lyase, N terminus
Representative CDS sequence Show only first row Show all	>Potri.004G124100.1 pacid=42794399 polypeptide=Potri.004G124100.1.p locus=Potri.004G124100 ID=Potri.004G124100.1.v4.1 annot-version=v4.1 ATGGCAGTGGGTAAGGCCATGCTGATCTTTGTTTTTACTCTTGCAACATTGATTCCAAGCCTGCTGGCAGACATTGGCATTTTCGACGATGTGTGGCAAA AACGAGCGCAGGATGCTAAGAAGATGACATTGGAAGCCTACGTACCCGACCCGGAAGAGGCAACCGATGCTTTCAACGTTGAAGTTAACAAATACTCTCT TGCAAAGAATAGCAGCAGCCTTTATGGTGCTTTTGGGAGCACAAACATCACTAATTTGGACCTTGATGATGATGATAACGATAACGATAACGATGCCGAT TTTGAACAGTTCGCTAACAGCACTAGAAGGAACCTGAGGCAAGGGAGGAAAAAATACGCAGGTCCATGCCAGGTGACCAACCCAATTGACAGGTGCTGGA GGTGCCAAAGGAACTGGGCAAAAAACCGCAAGCAGTTAGCAAAATGTGCGCTTGGTTTTGGGCGTAGGACTACTGGAGGAATGGCCGGAAGGATATATGT TGTGACAGATAGCTCGGACAACAATGTTATGAAGCCAAAACCTGGGACTTTGCGTCATGCTGTGATCCAAAAGGAGCCATTGTGGATCATATTTTCAAAG AACATGAACATTAAGTTGTCGAAAGAGTTGATAATGTCTAGCCATAAGACGATTGATGGGCGTGGGCACCATGTACACATCTCTTATGGAGGTGGCATTA CAATACAATTCATCCATAACGTAATCATTCATGGAATTCGCATTCATCACATTATTGCTACTAGCGGTGGGAATATTAGGGACTCCGTGGACCATTATGG AATCAGGACCAACAGTGATGGAGATGGAATTTCCATCTTCGGCTCCACCGATGTCTGGATCGATCACGTTTCCATGTCTCGCTGCACCGATGGACTCATA GATGCAATTATGGGATCCACTGCAATTACCATTTCCAATTGCCATTTCACCCACCACAATGATGCCATCTTGCTGGGAGCAAGTGATAGCTACTCAGGCG ATCATCTTATGCAAGTCACAGTTGCATTCAATCATTTTGGCCAGGGGCTTGTACAGAGAATGCCAAGATGCAGATGGGGTTTCTTCCATGTTGTTAATAA TGACTACACTCATTGGCGCCTGTATGCTATTGGTGGCAGCAAACATCCTACCATTATCAGCCAGGGTAACCGCTTCATCGCACCACCTGAGAGTCATCTA AAACAGGTGACCAAGAGGGACTATGCAACGAAGGGAGAATGGAGTAAATGGACATGGAGATCAGAGAACGATCTAATGATGAATGGAGCCTTCTTTGTTC AATCTGGCCAGCCGAGAACCAAGAAACCGAACAGGAAGTTCATGATCAAAGCCAAACCCGGTGCAGTTGCTACAAGGATGACTCGCTTTGCTGGGGCACT TGATTGCAAACCAGGTAGAAAATGCTAG
AA sequence Show only first row Show all	>Potri.004G124100.1 pacid=42794399 polypeptide=Potri.004G124100.1.p locus=Potri.004G124100 ID=Potri.004G124100.1.v4.1 annot-version=v4.1 MAVGKAMLIFVFTLATLIPSLLADIGIFDDVWQKRAQDAKKMTLEAYVPDPEEATDAFNVEVNKYSLAKNSSSLYGAFGSTNITNLDLDDDDNDNDNDAD FEQFANSTRRNLRQGRKKYAGPCQVTNPIDRCWRCQRNWAKNRKQLAKCALGFGRRTTGGMAGRIYVVTDSSDNNVMKPKPGTLRHAVIQKEPLWIIFSK NMNIKLSKELIMSSHKTIDGRGHHVHISYGGGITIQFIHNVIIHGIRIHHIIATSGGNIRDSVDHYGIRTNSDGDGISIFGSTDVWIDHVSMSRCTDGLI DAIMGSTAITISNCHFTHHNDAILLGASDSYSGDHLMQVTVAFNHFGQGLVQRMPRCRWGFFHVVNNDYTHWRLYAIGGSKHPTIISQGNRFIAPPESHL KQVTKRDYATKGEWSKWTWRSENDLMMNGAFFVQSGQPRTKKPNRKFMIKAKPGAVATRMTRFAGALDCKPGRKC

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15110			Pectate lyase family protein (...		Potri.004G124100 [exp]	0	1
AT5G50790		SWEET10, AtSWEE...	Nodulin MtN3 family protein (....		Potri.015G101400 [exp]	1.00	0.9897
AT2G20875		EPF1	epidermal patterning factor 1 ...		Potri.013G136100 [exp]	2.82	0.9601
AT2G01150		RHA2B	RING-H2 finger protein 2B (.1)		Potri.007G086100 [exp]	3.16	0.9328
					Potri.002G098050 [exp]	3.87	0.9374
					Potri.001G060750 [exp]	4.00	0.9342
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Potri.010G236951 [exp]	4.00	0.8636
					Potri.001G189601 [exp]	15.87	0.7551
AT3G47570			Leucine-rich repeat protein ki...		Potri.018G120901 [exp]	41.91	0.8696
AT3G02310	MADS	AGL4, SEP2	SEPALLATA 2, AGAMOUS-like 4, K...		Potri.004G115500 [exp]	77.35	0.8515
					Potri.006G102050 [exp]	90.33	0.8515

Compare expression of checked genes

Potri.004G124100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.