Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15100 389 / 6e-135 ATPIN8, PIN8 PIN-FORMED 8, Auxin efflux carrier family protein (.1) AT5G16530 293 / 2e-97 PIN5 PIN-FORMED 5, Auxin efflux carrier family protein (.1) AT2G01420 212 / 3e-63 PIN4, ATPIN4 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) AT5G57090 200 / 1e-58 MM31, ATPIN2, AGR1, AGR, WAV6, EIR1 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) AT1G70940 199 / 4e-58 PIN3, ATPIN3 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) AT1G77110 197 / 5e-58 PIN6 PIN-FORMED 6, Auxin efflux carrier family protein (.1) AT1G23080 197 / 8e-58 PIN7, ATPIN7 ARABIDOPSIS PIN-FORMED 7, Auxin efflux carrier family protein (.1.2.3) AT1G73590 184 / 1e-52 ATPIN1, PIN1 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G078300 [exp] 582 / 0 AT5G15100 358 / 5e-123 PIN-FORMED 8, Auxin efflux carrier family protein (.1) Potri.019G052800 [exp] 303 / 1e-101 AT5G16530 471 / 7e-168 PIN-FORMED 5, Auxin efflux carrier family protein (.1) Potri.013G087000 [exp] 298 / 2e-99 AT5G16530 513 / 0.0 PIN-FORMED 5, Auxin efflux carrier family protein (.1) Potri.008G129400 [exp] 214 / 9e-64 AT1G70940 961 / 0.0 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) Potri.015G038700 [exp] 212 / 3e-63 AT1G73590 858 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.012G047200 [exp] 211 / 7e-63 AT1G73590 870 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.010G112800 [exp] 211 / 8e-63 AT1G70940 952 / 0.0 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) Potri.014G146800 [exp] 207 / 1e-62 AT1G23080 239 / 4e-73 ARABIDOPSIS PIN-FORMED 7, Auxin efflux carrier family protein (.1.2.3) Potri.016G035300 [exp] 206 / 3e-61 AT1G73590 743 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010303 [exp] 467 / 1e-165 AT5G15100 399 / 1e-138 PIN-FORMED 8, Auxin efflux carrier family protein (.1) Lus10013422 [exp] 457 / 1e-161 AT5G15100 397 / 4e-138 PIN-FORMED 8, Auxin efflux carrier family protein (.1) Lus10020193 [exp] 310 / 6e-104 AT5G16530 548 / 0.0 PIN-FORMED 5, Auxin efflux carrier family protein (.1) Lus10026994 [exp] 299 / 9e-100 AT5G16530 532 / 0.0 PIN-FORMED 5, Auxin efflux carrier family protein (.1) Lus10020830 [exp] 214 / 6e-69 AT2G01420 308 / 4e-103 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) Lus10009686 [exp] 211 / 9e-68 AT2G01420 288 / 1e-95 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) Lus10018007 [exp] 206 / 5e-66 AT5G57090 276 / 2e-90 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Lus10009054 [exp] 211 / 5e-63 AT1G73590 856 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10042004 [exp] 206 / 6e-63 AT1G73590 539 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10001429 [exp] 202 / 3e-59 AT5G57090 837 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [poplar] [flax] CPA_AT PF03547 [poplar] [flax] Mem_trans Membrane transport protein
Representative CDS sequence Show only first row Show all	>Potri.004G124200.1 pacid=42793758 polypeptide=Potri.004G124200.1.p locus=Potri.004G124200 ID=Potri.004G124200.1.v4.1 annot-version=v4.1 ATGATTTCTGCAGCTGATGTCTATCATGTGGTGACAGCCACAGTTCCATTATATTTTGCCATGATATTGGCGTACATCTCTGTGAAATGGTGGAAGCTCT TTACACCAGATCAGTGTGCAGGCATAAACAAGTTTGTTGCCAAATTCTCAATCCCATTATTATCATTCCAAGTTATCTCTGGTATCAATCCATACAAAAT GAACCTGAAACTTATATTTGCCGACTTTCTTCAAAAACTACTAGCCCTTTTAGTGCTCACAGCACTCGCCAAAATCAGCTCTCGCGGACGGTTGAATTGG ATCATCACTGGTCTCTCCCTCTCAACATTGCCCAACACTTTGATTCTGGGGATTCCACTTCTGAGGGCTATGCATGGGGCTGAGGCAGAGCCACTTCTTT CACAGATAGTTGGCCTGCAAAGCCTAATTTGGTACAATTTGTTGTTGTTTCTGTTTGAGCTCAATGCCACCAAGGAAGCCACTGTGGCACCATCTTCAGA ATCCACAGGGGATCTAGAGGCTCTTCAAGAAGCACAACACAAAGACGACGAGGGAGTGCAAAGAAGAACAAGGAAAGTCAAAGCCATGGTCATTCTTTTG ACGGTGGGAAGGAAGCTAATGAGCAATCCAAACTTTTACGCTACCTTGGTGGCTCTTATCTGGGCAAGCATACACTCTCGGTGGGGAGTGAACTTGCCGG ACATTGTTGATAAATCCGTAAGGATATTGTCAACAGGAGGGCTTGGTATGGCAATGTTCAGCTTAGGTCTATTTATGGCATCGCGGCCCAGCATAATAGC ATGTGGAATCCCAATGGCAATGGTAGCCATGGCAATGAAGTTCATCGTAGGGCCTGCTCTAATTGCAGTCGCTTCCATTGCTGTTGGACTAAAGGGAACA GTGCTCAAAGTGGCAATTGTGCAGGCAGCTCTTCCTCAAGGGATCGTTCCATTCGTCTTTGCAAAAGAGTACAACGTTCATCCGGATACATTGAGCACAG GGGTAATATTTGGCATGCTCATTTCCATGCCAATAGCATTGGCCTACTACTCCTTATTAGCATTGTAA
AA sequence Show only first row Show all	>Potri.004G124200.1 pacid=42793758 polypeptide=Potri.004G124200.1.p locus=Potri.004G124200 ID=Potri.004G124200.1.v4.1 annot-version=v4.1 MISAADVYHVVTATVPLYFAMILAYISVKWWKLFTPDQCAGINKFVAKFSIPLLSFQVISGINPYKMNLKLIFADFLQKLLALLVLTALAKISSRGRLNW IITGLSLSTLPNTLILGIPLLRAMHGAEAEPLLSQIVGLQSLIWYNLLLFLFELNATKEATVAPSSESTGDLEALQEAQHKDDEGVQRRTRKVKAMVILL TVGRKLMSNPNFYATLVALIWASIHSRWGVNLPDIVDKSVRILSTGGLGMAMFSLGLFMASRPSIIACGIPMAMVAMAMKFIVGPALIAVASIAVGLKGT VLKVAIVQAALPQGIVPFVFAKEYNVHPDTLSTGVIFGMLISMPIALAYYSLLAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15100		ATPIN8, PIN8	PIN-FORMED 8, Auxin efflux car...		Potri.004G124200 [exp]	0	1
AT1G69510			cAMP-regulated phosphoprotein ...		Potri.010G167000 [exp]	1.00	0.9330
AT3G04030	GARP		Homeodomain-like superfamily p...		Potri.013G060200 [exp]	2.00	0.9252	Pt-MYR1.2
					Potri.010G047000 [exp]	2.44	0.9255
AT5G18170		GDH1	glutamate dehydrogenase 1 (.1)		Potri.013G058300 [exp]	2.44	0.9092	Pt-GDH1.2
					Potri.010G132101 [exp]	3.46	0.9311
AT2G14520			CBS domain-containing protein ...		Potri.014G012400 [exp]	5.09	0.8888
AT5G40270			HD domain-containing metal-dep...		Potri.008G190200 [exp]	6.00	0.8772
AT1G28200		FIP1	FH interacting protein 1 (.1)		Potri.002G184100 [exp]	6.92	0.8684
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Potri.017G052900 [exp]	9.16	0.8738
AT1G64700			unknown protein		Potri.001G448500 [exp]	10.77	0.8118

Compare expression of checked genes

Potri.004G124200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.