Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39350 783 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 478 / 2e-158 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 446 / 2e-146 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G01580 439 / 7e-146 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G03380 417 / 1e-136 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G27110 411 / 2e-134 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G35130 411 / 4e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21300 412 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 409 / 2e-131 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16860 407 / 4e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G059400 [exp] 480 / 6e-159 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G191000 [exp] 469 / 1e-155 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.011G156800 [exp] 446 / 5e-146 AT4G21300 842 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G466066 [exp] 427 / 4e-139 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G161800 [exp] 419 / 3e-137 AT2G03380 786 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G044700 [exp] 419 / 4e-136 AT3G22690 582 / 0.0 unknown protein Potri.005G215500 [exp] 422 / 1e-135 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G006800 [exp] 417 / 1e-135 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.008G052200 [exp] 417 / 7e-135 AT2G39620 816 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008136 [exp] 774 / 0 AT5G39350 639 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013176 [exp] 764 / 0 AT5G39350 621 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015225 [exp] 469 / 2e-154 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 456 / 5e-150 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008967 [exp] 434 / 3e-141 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019735 [exp] 432 / 5e-141 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 431 / 5e-140 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035788 [exp] 422 / 2e-137 AT3G16610 636 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10028855 [exp] 433 / 8e-137 AT4G21300 873 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038400 [exp] 420 / 8e-136 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.004G124400.1 pacid=42795802 polypeptide=Potri.004G124400.1.p locus=Potri.004G124400 ID=Potri.004G124400.1.v4.1 annot-version=v4.1 ATGAATGGCCCAACAAAGACTACTATATCCAAAACAACCAAGCTCTTGCTCGCCCCTAAAACGACCCAATACCAGTCTCTCTTAAAACACTATGGAGCCG CTCAATCCCTCACCAGTACAAAACAACTCCATGCCCACCTCATTACCTCTGGCCTTCTCTCCATCGATATCCGGTCAGTCCTTGTCGCAACCTATGCGCA CTGTGGGTACGTTCATAATGCACGCAAACTGTTCGATGAATTGCGTCAACGAGGCACGCTCTTATATAATTTCATGATTAAAATGTATATAGCTAAGGGG GATTATTTTGAAGCGATGAAGGTGTTTCTTGAAATGCTTGGATCAAAAGATTGCTGCCCGGATAATTATACATACCCGTTTGTTATTAAAGCCTGTAGTG AATTGTTATTGGTTGAATATGGTAGAGTGCTTCATGGCCTGACGTTAGTGTCAAAGTTTGGTTCACACTTGTTTGTGCTGAATTCTTTATTGGCAATGTA TATGAATTGTGGGGAGGTGGAGGAGGCAAGAAAAGTTTTTGATGCAATGAAAGAGAAGAGTGTGGTTTCTTGGAATACGATGATAAATGGGTATTTCAAG AATGGGTTTGCAAATACTGCTTTGGTGGTTTTTAACCAAATGGTGGATTCTGGGGTTGAAATTGATGGTGCTAGTGTGGTTTCCGTGTTGCCGGCTTGTG GGTATTTGAAGGAATTGGAAGTGGGGAGAAGGGTTCATGGATTAGTGGAAGAGAAGGTTTTAGGTAAAAAGATAGTGAGCAATGCATTGGTGGATATGTA TGCTAAGTGTGGTAGTATGGATGAGGCGAGATTGGTTTTTGATAACATGGTTGAAAGGGATGTAGTGAGTTGGACTTCAATGATTAATGGGTACATTTTG AATGGTGATGCGAAAAGTGCATTATCACTTTTTAAGATTATGCAGATTGAAGGGTTACGACCCAATTCAGTGACTATAGCCTTGATTCTTTTGGCTTGTG CTAGTTTGAATAATTTGAAGGACGGTCGTTGCTTGCATGGTTGGGTGATGAAGCAAAGGCTTTATTCAGAAGTTGCTGTAGAGACTTCATTGATTGACAT GTATGCAAAATGCAATTGTCTTGGCCTAAGTTTCTCAGTCTTTACTAGAACTTCAAGAAAGAAAACAGTTCCATGGAATGCATTGCTCTCTGGTTGTGTT CATAATAAACTTGCAACCGAAGCAATAGGACTTTTCAAGAAAATGCTGATGGAAGGAGTGGAAATAAATGCTGCAACATGCAATAGTCTCCTTCCTGCAT ATGGCATTCTTGCTGATCTGCAGCCTGTAAACAATATAAACAGTTATCTAATGAGGTCTGGGTTTGTTTCAAATATTCAAGTTGCCACATCTCTGATTGA TATATATTCCAAGTGTGGAAGTTTAGAATCTGCTCACAAGATTTTTAATACCATCCCTGTAGATGTCCAGGACATTTTTGTGTGGAGTATAATTATAGCT GGTTATGGAATGCATGGACATGGTGAGACTGCTGTTTCACTTTTCAAACAAATGGTTCAGTCTGGGGTGAAGCCAAATGATGTTACTTTTACTTCAGTAT TGCAATCTTGCAGCCATGCTGGCATGGTGGATGATGGCTTGTATTTGTTCAAATTCATGCTCAAGGATCACCAAACAATCCCCAATGATGATCATTACAC ATGCATGGTTGATTTGCTTGGTCGTGCTGGTCGAATGGATGAAGCTTATGATCTGATAAAGACAATGCCATTTATGCCAGGCCATGCTGTTTGGGGTGCA TTGCTTGGTGCTTGTGTGATGCATGAAAATGTTGAATTGGGAGAGGTTGCAGCAAGATGGCTTTTTGAGCTCGAGCCAGGTAACACAGGAAATTATGTGC TGCTGGCCAAACTTTATGCTGCATTGGGAAGGTGGGAAGATGCAGAAAATGTGAGACAAAGGATGGATGACATAGGATTAAGAAAAGCACCTGCCCACAG TCTGATCGAGGCTGGAACTGTGAATTGGTAA
AA sequence Show only first row Show all	>Potri.004G124400.1 pacid=42795802 polypeptide=Potri.004G124400.1.p locus=Potri.004G124400 ID=Potri.004G124400.1.v4.1 annot-version=v4.1 MNGPTKTTISKTTKLLLAPKTTQYQSLLKHYGAAQSLTSTKQLHAHLITSGLLSIDIRSVLVATYAHCGYVHNARKLFDELRQRGTLLYNFMIKMYIAKG DYFEAMKVFLEMLGSKDCCPDNYTYPFVIKACSELLLVEYGRVLHGLTLVSKFGSHLFVLNSLLAMYMNCGEVEEARKVFDAMKEKSVVSWNTMINGYFK NGFANTALVVFNQMVDSGVEIDGASVVSVLPACGYLKELEVGRRVHGLVEEKVLGKKIVSNALVDMYAKCGSMDEARLVFDNMVERDVVSWTSMINGYIL NGDAKSALSLFKIMQIEGLRPNSVTIALILLACASLNNLKDGRCLHGWVMKQRLYSEVAVETSLIDMYAKCNCLGLSFSVFTRTSRKKTVPWNALLSGCV HNKLATEAIGLFKKMLMEGVEINAATCNSLLPAYGILADLQPVNNINSYLMRSGFVSNIQVATSLIDIYSKCGSLESAHKIFNTIPVDVQDIFVWSIIIA GYGMHGHGETAVSLFKQMVQSGVKPNDVTFTSVLQSCSHAGMVDDGLYLFKFMLKDHQTIPNDDHYTCMVDLLGRAGRMDEAYDLIKTMPFMPGHAVWGA LLGACVMHENVELGEVAARWLFELEPGNTGNYVLLAKLYAALGRWEDAENVRQRMDDIGLRKAPAHSLIEAGTVNW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G39350			Tetratricopeptide repeat (TPR)...		Potri.004G124400 [exp]	0	1
AT1G18485			Pentatricopeptide repeat (PPR)...		Potri.009G067000 [exp]	1.00	0.9348
AT3G50420			Pentatricopeptide repeat (PPR)...		Potri.005G131800 [exp]	2.00	0.9275
AT3G12770		MEF22	mitochondrial editing factor ...		Potri.010G063900 [exp]	6.70	0.9140
AT3G08820			Pentatricopeptide repeat (PPR)...		Potri.006G105700 [exp]	7.07	0.9053
AT2G22410		SLO1	SLOW GROWTH 1 (.1)		Potri.001G019500 [exp]	7.48	0.9201
AT1G16480			Tetratricopeptide repeat (TPR)...		Potri.007G068600 [exp]	7.93	0.9258
AT1G13410			Tetratricopeptide repeat (TPR)...		Potri.008G121400 [exp]	9.38	0.9077
AT4G14850		MEF11, LOI1	lovastatin insensitive 1, Pent...		Potri.010G086900 [exp]	9.48	0.9072
AT1G31430			Pentatricopeptide repeat (PPR-...		Potri.003G088600 [exp]	11.31	0.8882
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.014G132100 [exp]	12.96	0.8968

Compare expression of checked genes

Potri.004G124400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.