Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15470 874 / 0 GAUT14 galacturonosyltransferase 14 (.1) AT3G01040 863 / 0 GAUT13 galacturonosyltransferase 13 (.1.2) AT5G54690 528 / 0 IRX8, GAUT12, LGT6 IRREGULAR XYLEM 8, galacturonosyltransferase 12 (.1) AT3G58790 402 / 7e-135 GAUT15 galacturonosyltransferase 15 (.1) AT5G47780 334 / 1e-107 GAUT4 galacturonosyltransferase 4 (.1) AT3G61130 333 / 2e-106 GAUT1, LGT1 galacturonosyltransferase 1 (.1) AT4G38270 313 / 1e-98 GAUT3 galacturonosyltransferase 3 (.1.2) AT3G25140 308 / 3e-98 QUA1, GAUT8 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT1G18580 305 / 3e-97 GAUT11 galacturonosyltransferase 11 (.1) AT2G20810 305 / 3e-97 GAUT10, LGT4 galacturonosyltransferase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G090800 [exp] 964 / 0 AT5G15470 882 / 0.0 galacturonosyltransferase 14 (.1) Potri.001G416800 [exp] 542 / 0 AT5G54690 851 / 0.0 IRREGULAR XYLEM 8, galacturonosyltransferase 12 (.1) Potri.011G132600 [exp] 533 / 0 AT5G54690 871 / 0.0 IRREGULAR XYLEM 8, galacturonosyltransferase 12 (.1) Potri.014G142000 [exp] 431 / 3e-146 AT3G58790 663 / 0.0 galacturonosyltransferase 15 (.1) Potri.006G001100 [exp] 339 / 8e-110 AT5G47780 776 / 0.0 galacturonosyltransferase 4 (.1) Potri.016G001700 [exp] 341 / 9e-110 AT5G47780 885 / 0.0 galacturonosyltransferase 4 (.1) Potri.002G151400 [exp] 327 / 7e-104 AT3G61130 1017 / 0.0 galacturonosyltransferase 1 (.1) Potri.014G073800 [exp] 324 / 8e-103 AT3G61130 1011 / 0.0 galacturonosyltransferase 1 (.1) Potri.002G246500 [exp] 315 / 7e-101 AT3G25140 912 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032990 [exp] 860 / 0 AT3G01040 955 / 0.0 galacturonosyltransferase 13 (.1.2) Lus10013189 [exp] 859 / 0 AT5G15470 952 / 0.0 galacturonosyltransferase 14 (.1) Lus10030703 [exp] 828 / 0 AT3G01040 926 / 0.0 galacturonosyltransferase 13 (.1.2) Lus10015379 [exp] 765 / 0 AT3G01040 833 / 0.0 galacturonosyltransferase 13 (.1.2) Lus10035836 [exp] 528 / 0 AT5G54690 887 / 0.0 IRREGULAR XYLEM 8, galacturonosyltransferase 12 (.1) Lus10038739 [exp] 340 / 2e-109 AT5G47780 904 / 0.0 galacturonosyltransferase 4 (.1) Lus10041389 [exp] 332 / 1e-106 AT3G61130 1020 / 0.0 galacturonosyltransferase 1 (.1) Lus10009311 [exp] 331 / 8e-106 AT3G61130 1018 / 0.0 galacturonosyltransferase 1 (.1) Lus10036540 [exp] 332 / 3e-105 AT3G61130 1015 / 0.0 galacturonosyltransferase 1 (.1) Lus10018554 [exp] 314 / 1e-100 AT2G20810 872 / 0.0 galacturonosyltransferase 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF01501 [poplar] [flax] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Potri.004G124500.1 pacid=42794077 polypeptide=Potri.004G124500.1.p locus=Potri.004G124500 ID=Potri.004G124500.1.v4.1 annot-version=v4.1 ATGCAGCTTCACATCTCTCCTAGCATGAGAAGCATCACTATATCTTCGAGCGGCAACAATGGATTTATTGACTCAATGAAGATCAAAGTCGCAGCTCGCC ATATCTCTTATCGAACCCTTTTTCATACTATACTCATTCTTGCTTTCTTGTTACCTTTTGTATTCATTCTTACTGCTCTGGTTACGCTTGAAGGAGTCAA TAAGTGCTCCTCATTTGATTGTTTAGGTAGGCGGTTAGGACCAAGGCTTCTTGGAAGAGTAGATGATTCAGGGAGGCTTGTTAAAGACTTTTACAAGATA CTCAATCAAGTAAAAAATGAGGAAATCCCAGATGGTGTAAAGCTTCCGGCTTCTTTTAATCACCTTGTTTCTGAAATGAAGAACAATCAGTATGATGCAA GGACATTTGCGTTCATGTTGAGGGCTATGATGGAAAAGTTGGAAAGAGAAATTAGGGAATCTAAATTTGCAGAGCTGATGAACAAACACTTTGCTGCAAG TTCCATCCCCAAAAGCATCCACTGTCTCTCTCTACGTCTGACTGATGAATATTCTTCTAATGCTCATGCACGTACACAGTTGCCTTCTCCAGAGTTCCTT CCTTTGCTCTCTGACAACTCGTATCACCACTTTGTCCTCTCAACTGATAACATTTTGGCTGCCTCAGTTGTTGTCACTTCTACTGTCCAGTCATCTCTAA AGCCTGACAGGATAGTTTTTCACATCATCACTGACAAGAAAACCTATGCGGGTATGCATTCATGGTTTGCACTAAATCCAGCCTCCCCTGCTATTGTTGA AGTGAAGGGTGTTCACCAGTTTGACTGGTTAACAAGAGAGAATGTTCCAGTGCTTGAAGCTGTGGAGAATCATAATGGTATCAGGGATTATTACCATGGG AATCATATTGCAGGGGCAAATCTTAGTGATACAACACCTCGGAGATTTGCTTCTAAATTGCAGGCTAGAAGTCCGAAGTATATATCGTTACTTAACCATC TTCGGATATACATACCCGAGCTCTTTCCAAACCTCGACAAGGTGGTGTTTTTAGATGATGATGTTGTAATTCAGCATGATTTGTCTCCACTTTGGGAAAT TGACCTTCAGGGAAAGGTCAATGGAGCCGTAGAAACTTGTAAAGGTGAAGATGAGTGGGTAATGTCCAAGCATCTCAAGAACTACTTCAATTTTTCACAT CCCCTTATAGCAAAGAATTTGGACCCTGATGAATGTGCTTGGGCTTATGGAATGAATATATTTGATCTCCATGCATGGAGGAACACGAATATAAGAGAAA CCTACCATTCCTGGATGAAAGAGAACCTGAAGTCAAACCTGACGATGTGGAAACTTGGAACCCTACCACCGTCTTTGATTGCCTTTAAAGGTCATGTTCA TCCAATTGATCCATTCTGGCATATGCTTGGACTGGGATATCAGAATAATACAAATATCGAGAGTGTAAAGAAGGCTGCAGTTATTCACTACAATGGTCAG TCTAAACCTTGGCTGGAAATTGGCTTTGAGCATCTACGACCATTTTGGACCAAGTATGTGAATTACTCTAATGATTTTATAAGGAACTGCCACATCCTGG ATTCAGTTTGA
AA sequence Show only first row Show all	>Potri.004G124500.1 pacid=42794077 polypeptide=Potri.004G124500.1.p locus=Potri.004G124500 ID=Potri.004G124500.1.v4.1 annot-version=v4.1 MQLHISPSMRSITISSSGNNGFIDSMKIKVAARHISYRTLFHTILILAFLLPFVFILTALVTLEGVNKCSSFDCLGRRLGPRLLGRVDDSGRLVKDFYKI LNQVKNEEIPDGVKLPASFNHLVSEMKNNQYDARTFAFMLRAMMEKLEREIRESKFAELMNKHFAASSIPKSIHCLSLRLTDEYSSNAHARTQLPSPEFL PLLSDNSYHHFVLSTDNILAASVVVTSTVQSSLKPDRIVFHIITDKKTYAGMHSWFALNPASPAIVEVKGVHQFDWLTRENVPVLEAVENHNGIRDYYHG NHIAGANLSDTTPRRFASKLQARSPKYISLLNHLRIYIPELFPNLDKVVFLDDDVVIQHDLSPLWEIDLQGKVNGAVETCKGEDEWVMSKHLKNYFNFSH PLIAKNLDPDECAWAYGMNIFDLHAWRNTNIRETYHSWMKENLKSNLTMWKLGTLPPSLIAFKGHVHPIDPFWHMLGLGYQNNTNIESVKKAAVIHYNGQ SKPWLEIGFEHLRPFWTKYVNYSNDFIRNCHILDSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15470		GAUT14	galacturonosyltransferase 14 (...		Potri.004G124500 [exp]	0	1
AT1G51590		MNS1, MANIB	ALPHA-MANNOSIDASE IB, alpha-ma...		Potri.008G007500 [exp]	9.38	0.9063	Pt-MAN1.1
AT1G52360			Coatomer, beta' subunit (.1.2)		Potri.003G056300 [exp]	10.24	0.9104
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Potri.013G018800 [exp]	10.90	0.9209
AT5G24710			Transducin/WD40 repeat-like su...		Potri.006G081800 [exp]	12.72	0.8877
AT1G62020			Coatomer, alpha subunit (.1)		Potri.015G069700 [exp]	12.96	0.9029
AT1G04430			S-adenosyl-L-methionine-depend...		Potri.002G036732 [exp]	13.92	0.9109
AT2G16405			Transducin/WD40 repeat-like su...		Potri.004G160000 [exp]	14.69	0.9019
AT1G71270		ATVPS52, TTD8, ...	T-DNA TRANSMISSION DEFECT 8, P...		Potri.006G027100 [exp]	22.80	0.9051	Pt-POK.1
AT1G52360			Coatomer, beta' subunit (.1.2)		Potri.001G179200 [exp]	23.95	0.9024
AT3G11130			Clathrin, heavy chain (.1)		Potri.010G186900 [exp]	26.83	0.8759

Compare expression of checked genes

Potri.004G124500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.