Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39360 439 / 2e-158 EDL2 EID1-like 2 (.1) AT5G15440 421 / 2e-150 EDL1 EID1-like 1 (.1) AT3G63060 197 / 1e-62 EDL3 EID1-like 3 (.1) AT4G02440 45 / 2e-05 EID1 EMPFINDLICHER IM DUNKELROTEN LICHT 1, F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G090300 [exp] 498 / 0 AT5G39360 415 / 1e-148 EID1-like 2 (.1) Potri.002G205150 [exp] 62 / 4e-11 AT4G02440 371 / 9e-129 EMPFINDLICHER IM DUNKELROTEN LICHT 1, F-box family protein (.1) Potri.014G130000 [exp] 61 / 2e-10 AT4G02440 370 / 2e-128 EMPFINDLICHER IM DUNKELROTEN LICHT 1, F-box family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042699 [exp] 476 / 6e-173 AT5G39360 428 / 4e-154 EID1-like 2 (.1) Lus10029662 [exp] 474 / 3e-172 AT5G39360 423 / 4e-152 EID1-like 2 (.1) Lus10025639 [exp] 451 / 4e-163 AT5G39360 429 / 2e-154 EID1-like 2 (.1) Lus10018196 [exp] 389 / 2e-138 AT5G39360 364 / 6e-129 EID1-like 2 (.1) Lus10028001 [exp] 211 / 2e-67 AT3G63060 312 / 6e-107 EID1-like 3 (.1) Lus10000659 [exp] 160 / 1e-48 AT3G63060 212 / 1e-68 EID1-like 3 (.1) Lus10007870 [exp] 55 / 2e-08 AT4G02440 399 / 9e-140 EMPFINDLICHER IM DUNKELROTEN LICHT 1, F-box family protein (.1) Lus10030373 [exp] 51 / 3e-07 AT4G02440 407 / 8e-143 EMPFINDLICHER IM DUNKELROTEN LICHT 1, F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G125000.12 pacid=42794935 polypeptide=Potri.004G125000.12.p locus=Potri.004G125000 ID=Potri.004G125000.12.v4.1 annot-version=v4.1 ATGATTTTAACAAAGCAATATCGTTGTATACACTCCTCGAGTTGTCAATGCACAAAAGGGCACCTAAGTGAAGACGTGATTTTTTTAGTATTTCAACAGC TGAACTGGAACCCTAAGTTCATTGCTACTATGTCCTGTGTGTGCAAATGGTTTGATGATCTTGCCAAGCGAGTGTTATGGAAGGAGTTTTGCCGAACAAG GGCTCCAAAGATGATGCTTGATCTGCAATCTAGTGGAAGTCACAGTGTTGATGGGAATTGGAGGGCACTTGGGAAACTGCTTATTTACTGTTCAGGATGT ACAAAGGGTGGCCTGTTCAATAACATTAACATCCCTGGTCATTTTGTTTATAGGACTCGGTTTTCTAGGACTTCAGGGAAGAGCTTTCTTTTGCCACAAT GCAGGACAGATGTATTATACGTGTCTGATCCCTGTGAACATCTTGACCAGGGGGATGAAGGGGATGTGGGGTTTTTTCGAGGAATTTTCAAGTCATTTTC CATGTCAAAGGTTCGGAAAATGCTAATTAAAAGGAAGGCCCAGCTTCACCCAACAGAGGTGTGTCCTTACTGTAAGGCGAAGTTGTGGAGTATGCAGCAA GCTGAAATGATACCACAGAGTGCCAGCTGCAGACTGGGTGCCTATGATGACTGCATTGAGTATTATGTGTGCCTCAATGGACACATGCTTGGAATATGCA CTCTCCTACCTTTGTCTGATTCAGAAGAGGCCTCTGAGTTGGAATAA
AA sequence Show only first row Show all	>Potri.004G125000.12 pacid=42794935 polypeptide=Potri.004G125000.12.p locus=Potri.004G125000 ID=Potri.004G125000.12.v4.1 annot-version=v4.1 MILTKQYRCIHSSSCQCTKGHLSEDVIFLVFQQLNWNPKFIATMSCVCKWFDDLAKRVLWKEFCRTRAPKMMLDLQSSGSHSVDGNWRALGKLLIYCSGC TKGGLFNNINIPGHFVYRTRFSRTSGKSFLLPQCRTDVLYVSDPCEHLDQGDEGDVGFFRGIFKSFSMSKVRKMLIKRKAQLHPTEVCPYCKAKLWSMQQ AEMIPQSASCRLGAYDDCIEYYVCLNGHMLGICTLLPLSDSEEASELE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G39360		EDL2	EID1-like 2 (.1)		Potri.004G125000 [exp]	0	1
AT4G38250			Transmembrane amino acid trans...		Potri.009G167900 [exp]	1.41	0.8654	PtrANT3
AT1G21760		ATFBP7	F-box protein 7 (.1)		Potri.002G082500 [exp]	1.41	0.8544
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Potri.004G089500 [exp]	1.73	0.8535
AT4G28070			AFG1-like ATPase family protei...		Potri.018G100900 [exp]	11.66	0.7895
AT1G79590		ATSYP52, SYP52	syntaxin of plants 52 (.1.2)		Potri.006G032800 [exp]	12.48	0.8392
AT3G56310			Melibiase family protein (.1.2...		Potri.019G056700 [exp]	13.78	0.7838
AT4G24940		ATSAE1A, AT-SAE...	SUMO-activating enzyme 1A (.1)		Potri.012G100800 [exp]	14.28	0.7756
AT2G12550		NUB1	homolog of human NUB1, ubiquit...		Potri.006G061500 [exp]	14.66	0.8170
AT1G16180			Serinc-domain containing serin...		Potri.001G038100 [exp]	15.49	0.8163
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Potri.003G128500 [exp]	16.73	0.7832

Compare expression of checked genes

Potri.004G125000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.