Plant FIBer expression Database

Potri.004G125400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G29270 283 / 3e-96 RING/U-box superfamily protein (.1.2)
AT1G69330 241 / 2e-79 RING/U-box superfamily protein (.1)
AT1G74370 209 / 2e-67 RING/U-box superfamily protein (.1)
AT1G21651 49 / 2e-06 zinc ion binding (.1)
AT1G21650 49 / 2e-06 SECA2 Preprotein translocase SecA family protein (.1.2.3)
AT5G13530 44 / 0.0001 KEG KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G090000
[exp]
452 / 5e-163 AT3G29270 281 / 2e-95 RING/U-box superfamily protein (.1.2)
Potri.012G067200
[exp]
288 / 5e-98 AT3G29270 270 / 3e-91 RING/U-box superfamily protein (.1.2)
Potri.010G161100
[exp]
241 / 9e-80 AT1G69330 263 / 5e-88 RING/U-box superfamily protein (.1)
Potri.019G066500
[exp]
49 / 2e-06 AT1G21651 716 / 0.0 zinc ion binding (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005220
[exp]
328 / 1e-113 AT3G29270 317 / 3e-109 RING/U-box superfamily protein (.1.2)
Lus10030699
[exp]
305 / 1e-104 AT3G29270 310 / 5e-107 RING/U-box superfamily protein (.1.2)
Lus10003473
[exp]
283 / 7e-96 AT3G29270 296 / 2e-101 RING/U-box superfamily protein (.1.2)
Lus10015732
[exp]
279 / 2e-94 AT3G29270 296 / 2e-101 RING/U-box superfamily protein (.1.2)
Lus10004666
[exp]
212 / 4e-68 AT1G69330 272 / 1e-91 RING/U-box superfamily protein (.1)
Lus10026648
[exp]
212 / 3e-65 AT1G69330 275 / 2e-89 RING/U-box superfamily protein (.1)
Lus10028560
[exp]
49 / 2e-06 AT1G21650 687 / 0.0 Preprotein translocase SecA family protein (.1.2.3)
Lus10018865
[exp]
42 / 0.0006 AT1G21650 573 / 0.0 Preprotein translocase SecA family protein (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0229 RING PF13445 zf-RING_UBOX RING-type zinc-finger
Representative CDS sequence
>Potri.004G125400.5 pacid=42794067 polypeptide=Potri.004G125400.5.p locus=Potri.004G125400 ID=Potri.004G125400.5.v4.1 annot-version=v4.1
ATGTTGAATTTTGCATCCAATTGCCTAGCTGGAAGTGTTAGTATGAACAATTCTACAAAGCCTACTCAAGTCCCATCAGAATACTCAGACGATGAGGCAT
CTTCTTTTAGCAGAGAAGAAGCTCTAGAGTGCCCAATATGCTGGGAATCCTTCAATATTGTGGAAAATGTGCCTTATGTTTTATGGTGTGGCCATACTCT
TTGCAAAAATTGCGTCCTAGGGCTTCAATGGGCTGTAGTGAAATTCCCCACATTACCTATTCGGCTTCCTCTCTTTATTTCTTGCCCGTGGTGCAATTTA
TCATCTTTCCGCTTTGTTTATAGAGGGAACCTCAAATTTCCTCGCAAGAATTATTTTCTACTTTGGATGGTTGAGAGCAAGAATGGTGACAGAGACAAGT
CTCCTGGCACCTTCTGTGAAGATCACCAACCGCACTGGTCATCAGACAGTAATTTAGCTCATGGAAGTCGGGTAAGCCGTGGTAACATCAGGAGAGGACA
CTATATTCATCACTCTGAACCATCAGGGACACACCATGATCATAATCATGTCAACAGTTACCTCAATGTGGAGAGAATACATTCTTCCCTTCAGAAATCA
CTGGCTTTCTTTGTTAGTCTGACAGCAAAGTTCCCATTGGTCATCATATTCCTTTTGATCATCTTATATGTAATACCTGCCAGTGCAAGCATTTTGGCCC
TGTACATTCTTATCACTGTTCTGTTTGCCCTCCCATCATTTCTCATTCTTTACTTTGCTTATCCTAGTTTGGATTGGCTTGTGAGAGAAATCATCACTTG
A
AA sequence
>Potri.004G125400.5 pacid=42794067 polypeptide=Potri.004G125400.5.p locus=Potri.004G125400 ID=Potri.004G125400.5.v4.1 annot-version=v4.1
MLNFASNCLAGSVSMNNSTKPTQVPSEYSDDEASSFSREEALECPICWESFNIVENVPYVLWCGHTLCKNCVLGLQWAVVKFPTLPIRLPLFISCPWCNL
SSFRFVYRGNLKFPRKNYFLLWMVESKNGDRDKSPGTFCEDHQPHWSSDSNLAHGSRVSRGNIRRGHYIHHSEPSGTHHDHNHVNSYLNVERIHSSLQKS
LAFFVSLTAKFPLVIIFLLIILYVIPASASILALYILITVLFALPSFLILYFAYPSLDWLVREIIT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G29270 RING/U-box superfamily protein... Potri.004G125400
[exp]
0 1
AT3G05700 Drought-responsive family prot... Potri.014G125500
[exp]
1.41 0.8613
AT4G10810 unknown protein Potri.002G173700
[exp]
4.00 0.8581
Potri.003G152250
[exp]
4.89 0.8364
AT5G16220 Octicosapeptide/Phox/Bem1p fam... Potri.017G119100
[exp]
6.00 0.8567
AT4G01280 MYB Homeodomain-like superfamily p... Potri.002G163100
[exp]
6.92 0.8429
AT2G39760 ATBPM3 BTB/POZ/MATH-domains containin... Potri.008G059600
[exp]
7.07 0.8351
AT1G01350 C3HZnF Zinc finger (CCCH-type/C3HC4-t... Potri.014G097300
[exp]
7.93 0.8391
Potri.003G152300
[exp]
10.77 0.8086
AT5G13310 unknown protein Potri.003G163100
[exp]
15.09 0.8182
AT2G44200 CBF1-interacting co-repressor ... Potri.006G000200
[exp]
15.36 0.8540

Potri.004G125400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.