Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29230 828 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 433 / 2e-143 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 424 / 7e-140 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 407 / 5e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G08820 396 / 1e-129 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G15300 390 / 4e-129 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G13410 384 / 6e-128 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G44880 387 / 8e-128 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G37570 382 / 6e-126 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G15930 385 / 1e-125 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G121400 [exp] 447 / 1e-151 AT1G13410 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G044700 [exp] 450 / 4e-150 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G258766 [exp] 439 / 5e-148 AT1G06150 705 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.016G128900 [exp] 442 / 1e-147 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G040100 [exp] 443 / 2e-147 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G105700 [exp] 438 / 5e-146 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G031600 [exp] 435 / 4e-144 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G012600 [exp] 427 / 3e-142 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G103600 [exp] 426 / 6e-142 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019797 [exp] 852 / 0 AT3G29230 768 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014113 [exp] 838 / 0 AT3G29230 767 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 455 / 6e-152 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 448 / 3e-149 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 447 / 7e-149 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 441 / 4e-147 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033026 [exp] 421 / 1e-138 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003422 [exp] 414 / 7e-138 AT2G44880 679 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10021069 [exp] 401 / 9e-134 AT1G13410 533 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021068 [exp] 401 / 9e-134 AT1G13410 533 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF12854 [poplar] [flax] PPR_1 PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.004G125500.1 pacid=42795295 polypeptide=Potri.004G125500.1.p locus=Potri.004G125500 ID=Potri.004G125500.1.v4.1 annot-version=v4.1 ATGTCTAAACAAATGCAAATTTCAGTACCAATAAGAGCCCCAACATGGGTCTCAACAAGAAGGATCTTTCAACAAAAATTACAAGACCTTCACAAATGTA CAAACTTAAACCACATAAAACAAGTTCATGCCCAAATCCTCAAACAAAATCTCCACCAAGACCTTTATGTAGCGCCCAAGTTAATTTCAGCTTTCTCTCT TTCTCAAGAAATGACTTTAGCTATTAATGTTTTCAAACAAATCCCTGACCCTAATGTCCACTTGTATAATACTTTTATAAGAGCCTGCGTGCAAAATTCC CATTCTTTACTGGCTTTTGAAACTTTCTTTGAAATGCAAAGGAATGGGCTTTTTGCTGATAATTTTACGTACCCTTTTCTTTTAAAGGCTTGTGATGGAC AGTCTTGGTTGCCTCTTGTGAAAATGATACATAACCATTTGGAGAAATATGGGTTTTTTCAGGATTTGTTTGTGCCCAATTCACTTATTGATAGTTACTG TAAATGTGGTTTGTTGGGTGTGAAGTCTGCAATGAGGTTGTTTAAGGTGATGGATGAAAGAGATGTGGTTTCTTGGAATTCTATGATTAGAGGGTTATTG AAAGTAGGGGAGTTGAGTGAAGCTTGCAAACTGTTTGATGAAATGCCCATGAAAGATGCTGTTAGTTGGAATACAATACTGGATGGGTATGTGAAGGCAG GAGAGATGAATAAAGCGTTTGGATTGTTTGAGAGCATGCCAGAGAGGAATGTGGTGTCGTGGTCGACGATGGTTTCCGGTTATTGTAAAGCAGGAGATAT GGAAATGGCTAGAATGTTGTTTGATAGAATGCCGGTCAAGAATTTGGTTTCTTGGACTATAATTGTATCTGGCTACGCTGTAAAGGGGCTAGCAAAGGAC GCCATAAGATCGTTTGAGCAAATGGAGGAGGCCGGTTTGAAGCCTGATGATGGCACAATTATTAGCATATTGGCTTCTTGTGCAGAGTCTGGTCTCCTTG GTTTAGGGAAGAGAGTTCATACTTCTATTGAGAGGATTAGGTACAAGTGCAGTGTTAATGTGTCTAATGCATTGGTTGACATGTATGCAAAGTGTGGTCA GGTGGACAGGGCGCTAAGCGTGTTCAATGGGATGTCAAAAAAAGATTTGGTCTCATGGAATTGCATGCTCCAAGGGTTAGCCATGCATGGGCACGGTGAG AAAGCGCTACAGCTCTTTTCTATAATGAGGCAAGAAGGGTTCAGGCCTGATAAAGTTACATTGGTTGCTGTTTTGTGTGCTTGTGTTCATGCAGGCTTTG TCGATGAGGGAATTCGATACTTTAATAATATGGAGAGGGATTATGGCATTGTTCCCCACATTGAGCATTATGGTTGCATGGTGGACCTTTTGGGTCGTGG AGGTCGTCTTAAAGAAGCTTATAGGCTTGTGCAAAGCATGCCAGTAGAACCAAATGTTGTTATTTGGGGTACCCTTTTGGGGGCCTGTAGAATGCATAAT GCTGTGGGACTTGCAGAGGAGGTACTAGATTGCTTGTTTAAGCTGGAACCATCAGATCCTGGTAATTACTCTCTGTTGTCAAATATTTTTGCATCTGCGG GAGACTGGAGCAGTGTTGCCAATGTAAGGCTGCAAATGAAAAACTTTGGAATACAGAAACCATCAGGGGCTAGTTCCATTGAGGTGGATGATGAGGTCCA TGAATTTACAGTATTTGATAAATCACACCCGAAATCAGATAAAATTTATCAAATGATTAACAGATTGGGTCTGGACCTGAAGCGAGTTCACGTTGTCCCA AAGGTATACCTGTAG
AA sequence Show only first row Show all	>Potri.004G125500.1 pacid=42795295 polypeptide=Potri.004G125500.1.p locus=Potri.004G125500 ID=Potri.004G125500.1.v4.1 annot-version=v4.1 MSKQMQISVPIRAPTWVSTRRIFQQKLQDLHKCTNLNHIKQVHAQILKQNLHQDLYVAPKLISAFSLSQEMTLAINVFKQIPDPNVHLYNTFIRACVQNS HSLLAFETFFEMQRNGLFADNFTYPFLLKACDGQSWLPLVKMIHNHLEKYGFFQDLFVPNSLIDSYCKCGLLGVKSAMRLFKVMDERDVVSWNSMIRGLL KVGELSEACKLFDEMPMKDAVSWNTILDGYVKAGEMNKAFGLFESMPERNVVSWSTMVSGYCKAGDMEMARMLFDRMPVKNLVSWTIIVSGYAVKGLAKD AIRSFEQMEEAGLKPDDGTIISILASCAESGLLGLGKRVHTSIERIRYKCSVNVSNALVDMYAKCGQVDRALSVFNGMSKKDLVSWNCMLQGLAMHGHGE KALQLFSIMRQEGFRPDKVTLVAVLCACVHAGFVDEGIRYFNNMERDYGIVPHIEHYGCMVDLLGRGGRLKEAYRLVQSMPVEPNVVIWGTLLGACRMHN AVGLAEEVLDCLFKLEPSDPGNYSLLSNIFASAGDWSSVANVRLQMKNFGIQKPSGASSIEVDDEVHEFTVFDKSHPKSDKIYQMINRLGLDLKRVHVVP KVYL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G29230			Tetratricopeptide repeat (TPR)...		Potri.004G125500 [exp]	0	1
AT3G15930			Pentatricopeptide repeat (PPR)...		Potri.001G464200 [exp]	1.00	0.9595
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.017G141200 [exp]	1.41	0.9373
AT2G44850			unknown protein		Potri.002G137300 [exp]	2.00	0.9104
AT1G09190			Tetratricopeptide repeat (TPR)...		Potri.005G019400 [exp]	3.46	0.9034
AT3G13160			Tetratricopeptide repeat (TPR)...		Potri.004G030000 [exp]	3.87	0.9050
AT2G36730			Pentatricopeptide repeat (PPR)...		Potri.017G083900 [exp]	3.87	0.9151
AT2G20710			Tetratricopeptide repeat (TPR)...		Potri.013G133000 [exp]	4.24	0.8904
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Potri.002G220300 [exp]	5.74	0.8814
AT1G49880		EMB3106, AtErv1...	EMBRYO DEFECTIVE 3106, Erv1/Al...		Potri.009G090200 [exp]	6.00	0.8804
AT5G07900			Mitochondrial transcription te...		Potri.015G038500 [exp]	6.32	0.8838

Compare expression of checked genes

Potri.004G125500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.