Plant FIBer expression Database

Potri.004G125800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G29240 358 / 3e-124 Protein of unknown function (DUF179) (.1), Protein of unknown function (DUF179) (.2)
AT1G33780 174 / 3e-52 Protein of unknown function (DUF179) (.1)
AT3G19780 63 / 8e-11 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G073000
[exp]
177 / 6e-53 AT1G33780 349 / 4e-120 Protein of unknown function (DUF179) (.1)
Potri.013G100000
[exp]
169 / 2e-50 AT1G33780 385 / 3e-134 Protein of unknown function (DUF179) (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005224
[exp]
334 / 2e-115 AT3G29240 291 / 2e-98 Protein of unknown function (DUF179) (.1), Protein of unknown function (DUF179) (.2)
Lus10001286
[exp]
181 / 1e-54 AT1G33780 386 / 9e-135 Protein of unknown function (DUF179) (.1)
Lus10009463
[exp]
178 / 2e-53 AT1G33780 379 / 6e-132 Protein of unknown function (DUF179) (.1)
Lus10030696
[exp]
163 / 1e-50 AT3G29240 139 / 8e-42 Protein of unknown function (DUF179) (.1), Protein of unknown function (DUF179) (.2)
Lus10030695
[exp]
110 / 6e-30 AT3G29240 89 / 8e-22 Protein of unknown function (DUF179) (.1), Protein of unknown function (DUF179) (.2)
Lus10040970
[exp]
54 / 1e-07 AT3G19780 500 / 5e-157 unknown protein
Lus10013425
[exp]
52 / 3e-07 AT3G19780 743 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02622 DUF179 Uncharacterized ACR, COG1678
Representative CDS sequence
>Potri.004G125800.1 pacid=42794579 polypeptide=Potri.004G125800.1.p locus=Potri.004G125800 ID=Potri.004G125800.1.v4.1 annot-version=v4.1
ATGGAAGTCTGCTTTCTCACCTCAAACTCCTTCACCAAGACCTTGGAACTTATCCCTTCAATCAAAGCTAGAGTTTTCTCATATCCCAAGAGAAGTTCTA
ATGCATTTCAGAGCAAAAGAGTTGCTCTCTCCACTTCCATAACATGTCGCCACATGCCACCACCATCACCATCTGCTGATGACTGTCGGCCTTTACTTGA
AGCTGACTGGAGATCGTTTAGAGCAAGATTGGTTGCCAATGAACAAGCACTGAGGCCCACTGAACCTTCCTCAACAGCAGACCCTGATATTGTTGTGGAT
CAGCAGCCACCACAAATCACAATTGGGGACAAATGGGCTCATACCATCCATGAACCTGAGAAAGGTTGCCTGCTGATTGCCACAGAAAAGCTTGACGGGG
TCCACATTTTCGAACGGACGGTCATCCTTCTCTTGTCAACTGGGCCAGGGAGCCCATATGGCATCATACTCAACCGGCCGTCCCTCATGTCGATCAAGGA
AATGAGATCAACGGCGCTTGATGTCGCCGGGGCGTTCTCCAATAGGCCATTGTTCTTTGGCGGGCCATTAGAGGAAGGGTTGTTTCTAGTCAGTCCAGAG
AGGGGTTATGATAACGATAGGGTGGCCGAGAGTGGGGTTTTCGAAGAAGTGATGAAGGGAGTGTACTATGGGACTAGAGAGAGTGCTGGTTGCGCAGCTG
AAATGGCGAGGAGGAATGTAGTTGGGCTCGGCGATTTCAGGTTCTTTGATGGATATTGTGGGTGGGAGAAGGGGCAATTGAAAGAGGAAATACAAGCTGG
TTATTGGGCTGTAGCAGCTTGTAGCCCAAGTGTGATTGGTCTTAACAAGGAAGGGACTCTTGGGCTTCGGGAGGAGGTTCTCTGGCTTATGGGCCTAAAA
AATGTCTGCTGA
AA sequence
>Potri.004G125800.1 pacid=42794579 polypeptide=Potri.004G125800.1.p locus=Potri.004G125800 ID=Potri.004G125800.1.v4.1 annot-version=v4.1
MEVCFLTSNSFTKTLELIPSIKARVFSYPKRSSNAFQSKRVALSTSITCRHMPPPSPSADDCRPLLEADWRSFRARLVANEQALRPTEPSSTADPDIVVD
QQPPQITIGDKWAHTIHEPEKGCLLIATEKLDGVHIFERTVILLLSTGPGSPYGIILNRPSLMSIKEMRSTALDVAGAFSNRPLFFGGPLEEGLFLVSPE
RGYDNDRVAESGVFEEVMKGVYYGTRESAGCAAEMARRNVVGLGDFRFFDGYCGWEKGQLKEEIQAGYWAVAACSPSVIGLNKEGTLGLREEVLWLMGLK
NVC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G29240 Protein of unknown function (D... Potri.004G125800
[exp]
0 1
AT1G72030 Acyl-CoA N-acyltransferases (N... Potri.005G054600
[exp]
2.44 0.9671
AT1G67090 RBCS1A ribulose bisphosphate carboxyl... Potri.017G114600
[exp]
3.00 0.9709
AT1G44000 unknown protein Potri.005G184700
[exp]
4.47 0.9566
AT5G50700 HSD1 hydroxysteroid dehydrogenase 1... Potri.015G099900
[exp]
5.19 0.9612
AT2G23910 NAD(P)-binding Rossmann-fold s... Potri.003G093700
[exp]
11.40 0.9563
AT3G47430 PEX11B peroxin 11B (.1) Potri.001G124400
[exp]
13.74 0.9540
AT5G10250 DOT3 DEFECTIVELY ORGANIZED TRIBUTAR... Potri.005G075400
[exp]
14.83 0.9457
AT4G27360 Dynein light chain type 1 fami... Potri.001G407900
[exp]
16.88 0.9378
AT5G04590 SIR sulfite reductase (.1) Potri.009G052600
[exp]
17.88 0.9521
AT2G24270 ALDH11A3 aldehyde dehydrogenase 11A3 (.... Potri.018G109700
[exp]
18.49 0.9495 Pt-ALDH11.1

Potri.004G125800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.