Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16520 192 / 9e-56 UGT88A1 UDP-glucosyl transferase 88A1 (.1.2.3) AT1G01420 182 / 5e-52 UGT72B3 UDP-glucosyl transferase 72B3 (.1) AT4G01070 177 / 3e-50 UGT72B1, GT72B1 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) AT1G01390 177 / 4e-50 UDP-Glycosyltransferase superfamily protein (.1) AT4G15280 168 / 7e-47 UGT71B5 UDP-glucosyl transferase 71B5 (.1) AT3G21780 166 / 5e-46 UGT71B6 UDP-glucosyl transferase 71B6 (.1) AT3G50740 164 / 5e-45 UGT72E1 UDP-glucosyl transferase 72E1 (.1) AT1G78270 163 / 8e-45 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT4G15260 159 / 3e-44 UDP-Glycosyltransferase superfamily protein (.1) AT4G36770 159 / 1e-43 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G089000 [exp] 697 / 0 AT3G16520 174 / 3e-49 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.004G069600 [exp] 220 / 2e-66 AT3G16520 498 / 2e-174 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.004G070900 [exp] 220 / 3e-66 AT3G16520 478 / 2e-166 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.004G071000 [exp] 220 / 4e-66 AT3G16520 485 / 2e-169 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.004G069800 [exp] 216 / 1e-64 AT3G16520 496 / 7e-174 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.004G070000 [exp] 214 / 4e-64 AT3G16520 474 / 4e-165 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.017G150000 [exp] 201 / 4e-59 AT3G16520 503 / 1e-176 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.015G027800 [exp] 201 / 5e-59 AT3G16520 355 / 1e-118 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.017G150100 [exp] 199 / 2e-58 AT3G16520 451 / 9e-156 UDP-glucosyl transferase 88A1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036969 [exp] 370 / 2e-122 AT1G78270 190 / 3e-53 UDP-glucosyl transferase 85A4 (.1) Lus10036967 [exp] 346 / 4e-115 AT4G01070 172 / 3e-48 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10037117 [exp] 296 / 8e-97 AT1G78270 143 / 2e-38 UDP-glucosyl transferase 85A4 (.1) Lus10039302 [exp] 209 / 4e-62 AT3G16520 393 / 2e-133 UDP-glucosyl transferase 88A1 (.1.2.3) Lus10039301 [exp] 202 / 2e-59 AT3G16520 481 / 9e-168 UDP-glucosyl transferase 88A1 (.1.2.3) Lus10005950 [exp] 202 / 3e-59 AT4G01070 573 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10001906 [exp] 198 / 9e-58 AT4G01070 431 / 1e-147 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10029452 [exp] 196 / 4e-57 AT4G01070 582 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10037114 [exp] 186 / 2e-56 AT1G07260 103 / 6e-26 UDP-glucosyl transferase 71C3 (.1) Lus10001905 [exp] 192 / 1e-55 AT1G01420 391 / 3e-132 UDP-glucosyl transferase 72B3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.004G126000.1 pacid=42795137 polypeptide=Potri.004G126000.1.p locus=Potri.004G126000 ID=Potri.004G126000.1.v4.1 annot-version=v4.1 ATGCCAAGTTCTGGTGACCGCAAACTTGCTCATGTAGCTCTCCTCCCAAGTGCTGGCATGGGCCATCTCACGCCCTTCCTTAGACTTGCTGCTTCACTCA CACTCCAAAATGTCCAAGTCACCTTCATCATCCCACACCCAACAGTCTCACTCTCTGAGTCACAAGCTTTATCTCAGTTATTTGCTTCCTTTCCTCAAAT CAAGCACCAGCAGTTTCATCTCCTTCCACTTGACAACCCTTCGGATGACCCTTTTTTCGAACATTTCCAACTCATCAAGAACTCCTCTCGCCTTCTTTCC CCACTTCTGTCTGCACTAAATCCACCCCTTTCTGTTTTTATCACGGACATGAGCTTGGCTTCGACGGTTACTCCCATCACTGAAGCTATTAGCCTTCCTA ATTATGTTCTCTTCACATCATCTGCTAAAATGCTGACATTTTTTCTATGTTACCCCACTTTAGCCGACTCAAAAGCTATGGATGAATTAGATGAGATGGA TGTCATCAAGATTCGGGGCCTGGAATTGATGCCCAAATCATGGATTCCCCCACCACTTCTGAAAAAAGGCAATAATATCCTAAAGACCAGTTTCATAGAG GATAGTAGAAAAGTCGCAGAATCAAGTGGAATTCTAGTTAACACGTTCGAAAGTTTTGAGCAAGAATCACTCAGAAAGCTAAATGATTGCCAACTACTCC TGGAAAGGCTACCTTCAGTTGTCGCCATTGGACCACTCCCACCATGTGATTTTGAGAAGAGCCAGTTACAGCTAACTTGGCTTGATGATCAACCAGCTGG ATCAGTTGTGTATGTTAGCTTTGGTAGTAGGACTGCTTTGTCGAGGGATCAAGTCAGAGAGTTAGGTGAAGGGCTGGTAAGGAGTGGTAGCAGGTTTATC TGGGTGGTGAAGGATAAAAAAGTTGACAGAGAAGATAATGAAGGATTGGAAGGGGTAATTGGAGATGAATTGATGGAGAGGATGAAAGAAAAGGGATTAG TTGTTAGGAATTGGGTAAACCAGGAGGATGTATTAAGCCACCCAGCAGTCGGAGGATTTTTCAGTCATTGTGGTTGGAATTCAGTGATGGAGGCTGCATG GCATGGAGTGAAGATCTTAGCTTGGCCCCAACATGGGGACCAGAAAGTCAACGCAGATATTGTGGAGAGGATTGGACTAGGGACCTGGGTGAAGAGTTGG GGATGGGGTGAGGAGATGATAGTGAATAGAGCAGAAATTGCAGAAAAGATTGGAGAAATTATGGGGAATGAATCATTAAGAATTCAGGCATTGGGCATCA AAGAAGAAGCGAGGAAAACAGTGGGAGTTGGTGGGTGTTCTAACAAAGGATTGTCTGAACTCATCAACATGTGGGGGAAGTTCTGA
AA sequence Show only first row Show all	>Potri.004G126000.1 pacid=42795137 polypeptide=Potri.004G126000.1.p locus=Potri.004G126000 ID=Potri.004G126000.1.v4.1 annot-version=v4.1 MPSSGDRKLAHVALLPSAGMGHLTPFLRLAASLTLQNVQVTFIIPHPTVSLSESQALSQLFASFPQIKHQQFHLLPLDNPSDDPFFEHFQLIKNSSRLLS PLLSALNPPLSVFITDMSLASTVTPITEAISLPNYVLFTSSAKMLTFFLCYPTLADSKAMDELDEMDVIKIRGLELMPKSWIPPPLLKKGNNILKTSFIE DSRKVAESSGILVNTFESFEQESLRKLNDCQLLLERLPSVVAIGPLPPCDFEKSQLQLTWLDDQPAGSVVYVSFGSRTALSRDQVRELGEGLVRSGSRFI WVVKDKKVDREDNEGLEGVIGDELMERMKEKGLVVRNWVNQEDVLSHPAVGGFFSHCGWNSVMEAAWHGVKILAWPQHGDQKVNADIVERIGLGTWVKSW GWGEEMIVNRAEIAEKIGEIMGNESLRIQALGIKEEARKTVGVGGCSNKGLSELINMWGKF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.004G126000 [exp]	0	1
AT2G41130	bHLH	bHLH106	basic helix-loop-helix (bHLH) ...		Potri.004G055700 [exp]	1.00	0.8746
AT2G48030			DNAse I-like superfamily prote...		Potri.014G136900 [exp]	2.00	0.8617
					Potri.001G307000 [exp]	2.64	0.8057
AT5G54470	CO		B-box type zinc finger family ...		Potri.001G414700 [exp]	5.74	0.8298
AT4G17870		RCAR11, PYR1	regulatory component of ABA re...		Potri.001G142500 [exp]	13.03	0.8231
AT5G50760			SAUR-like auxin-responsive pro...		Potri.001G060400 [exp]	13.56	0.8056
AT2G40330		RCAR9, PYL6	regulatory components of ABA r...		Potri.010G183900 [exp]	15.71	0.7668
					Potri.016G041301 [exp]	16.85	0.8252
AT3G47500	DOF	CDF3, AtDof3,3	cycling DOF factor 3 (.1)		Potri.008G087800 [exp]	17.32	0.8161
AT4G25500		ATRSP40, AT-SRP...	ARABIDOPSIS THALIANA ARGININE/...		Potri.012G133600 [exp]	18.76	0.6989

Compare expression of checked genes

Potri.004G126000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.