Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G42170 802 / 0 BED zinc finger ;hAT family dimerisation domain (.1) AT1G18560 125 / 1e-29 BED zinc finger ;hAT family dimerisation domain (.1) AT5G35430 83 / 4e-16 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G126780 [exp] 1671 / 0 AT3G42170 796 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1) Potri.018G126500 [exp] 1201 / 0 AT3G42170 796 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1) Potri.018G126750 [exp] 1063 / 0 AT3G42170 857 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1) Potri.003G031700 [exp] 600 / 0 AT3G42170 581 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1) Potri.001G383800 [exp] 360 / 4e-113 AT3G42170 387 / 4e-125 BED zinc finger ;hAT family dimerisation domain (.1) Potri.011G104000 [exp] 359 / 9e-113 AT3G42170 381 / 7e-123 BED zinc finger ;hAT family dimerisation domain (.1) Potri.011G125951 [exp] 253 / 5e-72 AT3G42170 313 / 2e-95 BED zinc finger ;hAT family dimerisation domain (.1) Potri.017G019466 [exp] 239 / 9e-67 AT3G42170 279 / 6e-82 BED zinc finger ;hAT family dimerisation domain (.1) Potri.006G065600 [exp] 167 / 1e-42 AT5G35430 635 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032337 [exp] 912 / 0 AT3G42170 839 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1) Lus10005558 [exp] 312 / 1e-94 AT3G42170 351 / 5e-111 BED zinc finger ;hAT family dimerisation domain (.1) Lus10027703 [exp] 85 / 1e-16 AT5G35430 726 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039983 [exp] 83 / 6e-16 AT5G35430 736 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000359 [exp] 41 / 0.0003 ND 35 / 0.002
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [poplar] [flax] C2H2-zf PF02892 [poplar] [flax] zf-BED BED zinc finger CL0361 [poplar] [flax] PF05699 [poplar] [flax] Dimer_Tnp_hAT hAT family C-terminal dimerisation region CL0361 [poplar] [flax] PF14372 [poplar] [flax] DUF4413 Domain of unknown function (DUF4413)
Representative CDS sequence Show only first row Show all	>Potri.004G126740.1 pacid=42795699 polypeptide=Potri.004G126740.1.p locus=Potri.004G126740 ID=Potri.004G126740.1.v4.1 annot-version=v4.1 ATGGACGCACGAGATTCGACATCGAACCGAGACGTCTCGTCGAGCGGCGGCAGCGGCACCACCACCGGCGTCGGAGGAGGAGAAGAGGATCCTATCCTTT CCGTCACTGCCACGCTTGCCAAAGACGCTTGGTTACACTTTAACTCTCGCCGGTTCAATGAGTGCCTCGAGGTTTTGTATCAGCTAAAGCAGAAAAAGGA AGACGATCCAAAGGTACTTCGTAATATTGCTATTGCGGAGTATAGTAGAGATGGTTATCCAGATCCAAAGAAGTTGCTTGAAGTGCTTAATAACATTGAG GTGCTTCATAATATTGCTATTGCGGAGTATAGTAGAGATGGTTATCCAGATCCAAAGAAGTTGCTTGAAGTGCTTAATAACATTGAGATTGCAACACTTG AAGAGAATAATCAGCTGATGACACCTCCAGAAAACCAGATGGCAACCCTTGAAGACAATAATCACTTGATTACTACTCCAGAATACCAGCTGGCAACCCT TGAAGAGAATAACCAGCTGATTACTACTCCAGAATACCAGATGGAAACATTTGAAGAAAACAATCATTCTATGCCTGCTCCTGAAACACAGCCTAACAAG AGGAGGAAAAGGAAGTCCATGGTTTGGGAACACTTCACCATAGAAACTGTAAGTGCTGATAGTAGAAGGGCTTTCTGTAAGCAGTGCAAGCAAAGCTTTG CATACAGCACAGGTTCAAAAGTAGCTGGTACCAGCCATCTTAAACGTCACATTGCCAAGGGAACTTGTCTAGCACTACTACGCAATCAGGGGAATCAACA AACACCTGGTACACCAGGGATGAATGGAAATGGCAGTATGTCTGATCCACCAAGACGTCACTACAGATCCCATAGCTCAGCCTACATTTCATTTGATTCA GACCGTTGCCGCCCTGAAATTGCCAGAATGATGATAATCCATGATTACCCTCTTCACATGGTCGAACATTCTGGATTTGTAACTTTTCTCAAGACTCTTG AACCCAGATTTGACATGGTGAGCTTTAATATTGTCCAAGGAGATTGTGTCTCAAGTTACTTGAGGGAAAAGCAAAATGTTATGAAGTTCATTGAGGGTTT GCCCGGACGTGTTTGCCTTACACTGGATGTATGGACATCTAGCCAAAGCTTAGGTTATGTGTTTATAACAGGACACTTCATTGATGGTTATTGGAAGCCA CAGAGGCGGATTCTCAATGTTGTGATGGAACCGAACCCTAACTCAGATGCAGCTCTTAGCCATGCTGTTGCTACTTGCCTATCTGATTGGAGTTTGGAAG GCAAGCTATTTTCTATCACTTTCAATCATCCAGTGGGTGAACCTGGGCTTCAAAACCTCAGATCTCTACTCTCTGTAAAAAATCCCCTTATCATCAATGG TCAGTTAATCCTTGGGAACTGCAGTGCTCGTACTTTAAGCAACTTTGCAAAAGAAGTGCTATGGGCAGGGCGAGAGATCATTAAGAAAGTCCGTTACAGT GTAAAGTATGTGAAGACCTCAGAATTTCATGAGCAAAAGTTCCTTGAGCTCAAGGAACAGCTTCAAGTCCCCAGTGAAAAAGACCTATCTCTTGACAACC AAGCTCAATGGAACACAACGTATCAGATGCTGGTTGCTGCTTCAGAGTTGAAGGAAGTATTTTCTTGCCTAGATACTTCCGATCCTGATTACAAAGAGGC TCCATCCATGGAAGACTGGAAGCGGGTTGACATTCTATGCACGTACTTGAAACCTCTTTTTGATGCAGCCAACTTCCTTGCCTCTAGAACTAACCCAAAC CAGAAGACATTCTTCCACGAAGTCTGGAAGATGCATGAGCTGTATCATTCTATTACAAGTCATGGGGATCCCTTTGTCATCAGTCTTGCTGAAATAATGC AAGAAAAGATAGACAAATATTTGAAGGAGTGCATCCTATCTTTGGCAATTGCTGTAGTCTTGGATCCTCGGTTTAGGATGAAGTTGATCGAGTTCAGTTT TGTGAAATTCTATGGTAAAGAAGCTAGCAAATACATTAAGATTGTTGATGATGCGCTCCATGAGCTTTTTCTCGAATATGCGGCGCTTCCTTTCCCTCTT ACGCCAGCTCACGCTGAAGATGGAAATTTTGAGAACATGAAGACTGAAGAAATTTCATACAATGAGCTCACAGATTTTGATGCGTATGTGGAGACTACTA GCCAAAATAAGAAGTCGGAGCTGGAGCAGTATTTAGAAGAGTCTTTGTTGCCTCGCTTCCAAGAGATGGATGTACTGAAATGGTGGGAAGAGAACAAGCT CCAGTATCCAGTTCTTTCAACAATGGCTCGTGATATATTGACCATGCAGGTGTCTACTGCTGATCCTGACTCTGTATTTGATACCGAGATCAAAGAGCTG GATGAGTATCGGAGTTCTTTGAGACCTGAAACCGTGGAAGCCCTTGTATGTGCAAAGGACTGGCTTCAGTACAGATCTGCTACAGAAGTTTCTAATGCTC TTGTGAAAGTAGAGGATCTTAGATCTTAG
AA sequence Show only first row Show all	>Potri.004G126740.1 pacid=42795699 polypeptide=Potri.004G126740.1.p locus=Potri.004G126740 ID=Potri.004G126740.1.v4.1 annot-version=v4.1 MDARDSTSNRDVSSSGGSGTTTGVGGGEEDPILSVTATLAKDAWLHFNSRRFNECLEVLYQLKQKKEDDPKVLRNIAIAEYSRDGYPDPKKLLEVLNNIE VLHNIAIAEYSRDGYPDPKKLLEVLNNIEIATLEENNQLMTPPENQMATLEDNNHLITTPEYQLATLEENNQLITTPEYQMETFEENNHSMPAPETQPNK RRKRKSMVWEHFTIETVSADSRRAFCKQCKQSFAYSTGSKVAGTSHLKRHIAKGTCLALLRNQGNQQTPGTPGMNGNGSMSDPPRRHYRSHSSAYISFDS DRCRPEIARMMIIHDYPLHMVEHSGFVTFLKTLEPRFDMVSFNIVQGDCVSSYLREKQNVMKFIEGLPGRVCLTLDVWTSSQSLGYVFITGHFIDGYWKP QRRILNVVMEPNPNSDAALSHAVATCLSDWSLEGKLFSITFNHPVGEPGLQNLRSLLSVKNPLIINGQLILGNCSARTLSNFAKEVLWAGREIIKKVRYS VKYVKTSEFHEQKFLELKEQLQVPSEKDLSLDNQAQWNTTYQMLVAASELKEVFSCLDTSDPDYKEAPSMEDWKRVDILCTYLKPLFDAANFLASRTNPN QKTFFHEVWKMHELYHSITSHGDPFVISLAEIMQEKIDKYLKECILSLAIAVVLDPRFRMKLIEFSFVKFYGKEASKYIKIVDDALHELFLEYAALPFPL TPAHAEDGNFENMKTEEISYNELTDFDAYVETTSQNKKSELEQYLEESLLPRFQEMDVLKWWEENKLQYPVLSTMARDILTMQVSTADPDSVFDTEIKEL DEYRSSLRPETVEALVCAKDWLQYRSATEVSNALVKVEDLRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G42170			BED zinc finger ;hAT family di...		Potri.004G126740 [exp]	0	1
AT3G42170			BED zinc finger ;hAT family di...		Potri.004G126780 [exp]	1.00	0.9450
AT1G40390			DNAse I-like superfamily prote...		Potri.003G024501 [exp]	1.41	0.9168
AT1G54380			spliceosome protein-related (....		Potri.007G124150 [exp]	4.89	0.8938
AT5G20610			unknown protein		Potri.006G145500 [exp]	6.00	0.8834
AT1G32330	HSF	ATHSFA1D	heat shock transcription facto...		Potri.001G138900 [exp]	7.74	0.8904
AT5G17900			microfibrillar-associated prot...		Potri.013G065600 [exp]	10.95	0.8820
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Potri.017G078900 [exp]	11.31	0.8352	GN.1
AT3G18840			Tetratricopeptide repeat (TPR)...		Potri.009G113500 [exp]	11.40	0.8914
AT1G56690			Pentatricopeptide repeat (PPR)...		Potri.005G006400 [exp]	11.48	0.8922
AT5G25070			unknown protein		Potri.002G000800 [exp]	11.83	0.8628

Compare expression of checked genes

Potri.004G126740 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.