Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39785 462 / 3e-154 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) AT1G69610 294 / 2e-89 Protein of unknown function (DUF1666) (.1) AT3G20260 137 / 1e-34 Protein of unknown function (DUF1666) (.1) AT1G73850 104 / 6e-23 Protein of unknown function (DUF1666) (.1) AT3G01175 81 / 7e-16 Protein of unknown function (DUF1666) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G082300 [exp] 999 / 0 AT5G39785 462 / 1e-153 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) Potri.008G004400 [exp] 144 / 9e-37 AT3G20260 426 / 3e-147 Protein of unknown function (DUF1666) (.1) Potri.017G084200 [exp] 144 / 5e-36 AT3G01175 140 / 1e-36 Protein of unknown function (DUF1666) (.1) Potri.015G046900 [exp] 118 / 2e-27 AT1G73850 416 / 2e-138 Protein of unknown function (DUF1666) (.1) Potri.012G056400 [exp] 103 / 8e-23 AT1G73850 397 / 5e-131 Protein of unknown function (DUF1666) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015368 [exp] 506 / 1e-169 AT5G39785 445 / 3e-148 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) Lus10007264 [exp] 502 / 2e-168 AT5G39785 411 / 2e-135 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) Lus10037176 [exp] 357 / 3e-113 AT5G39785 334 / 4e-106 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) Lus10036751 [exp] 354 / 6e-112 AT5G39785 328 / 7e-104 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) Lus10034809 [exp] 126 / 1e-30 AT3G20260 487 / 3e-171 Protein of unknown function (DUF1666) (.1) Lus10033354 [exp] 117 / 5e-28 AT3G20260 462 / 5e-162 Protein of unknown function (DUF1666) (.1) Lus10038936 [exp] 102 / 2e-22 AT1G73850 457 / 4e-155 Protein of unknown function (DUF1666) (.1) Lus10027226 [exp] 100 / 2e-21 AT1G73850 455 / 5e-153 Protein of unknown function (DUF1666) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07891 [poplar] [flax] DUF1666 Protein of unknown function (DUF1666)
Representative CDS sequence Show only first row Show all	>Potri.004G126800.1 pacid=42793814 polypeptide=Potri.004G126800.1.p locus=Potri.004G126800 ID=Potri.004G126800.1.v4.1 annot-version=v4.1 ATGGGTTCTGTTAATGCGTTTCTTAATAAGAAATTACTTCCTTTTGCAGCCTCTTTCTGGCTTTCTGTCTCCACTCTGTTCCTTTCTCTGTTTGGTTTCT TCGATAGAACCATGTTCAGAGTGAAGAGCGATAAAAGTTTGGAGGCCAAGGAACCAGAAGTTGAAGTTTCTGAATTTAAGGGAGCAAAAGAAATGAATGA ATTAGAAGAAAAGGAAAGGCCAAGTAAAAAAGAAGCCAAGGAACCAGAAGTTGGAGTTTCTGAATTTATGGAGACGAAAGAAGTTGATGAATTAGAAGAA AAAGAAACACCAAAGTTCTTCTTCAAATTCCAGTTTCAAACTTATAGAGAGGAAGATGAGCCTGTTCTCTTGAGTTCGGTACCTCCTACAAGCACTAACA AGTACGAGTTCTTGTCAGAGAGGGATTTCAGTCATTACTTGGAGAAGCCGGAGGTTGTTAGTCTTACAGTGAAAGAGTTGTATGCGGGTTCTAATGGTGA ATTTTTTGCCAATAAAAAGATTATGGAGGATGGGGTTTTATCTGATAAGGACTTTGCAGAAAAAGAATCAGAATCAGAAGCAGAATCTGTTCGTGAAGAA ATAAAAGAGATTTCTGCAGATAGTGTGCGTGATGAATATGATGCTTCGAGAGATGATGATGCTCCGTTGCTAACAGAGAAGGACTTTATTCTTTCAGATT CTATTGTTTCAAGCCATGAGTTTATGAGTCGTTATGTAGCTTCAACCAGCGATGGGTTCTTGTCACATAAAGATTTTGAAGATGTATTTGGACTTGATAT TTTGAAGGAAATTGATGGGCAGACGGAAGAATCAACCGACGAAAATTTGGAGTTAGAGTATTTAGATTTGAAGAATTTGAATGCCGGTTACGAGGCCGAT GATTTTGATGAGGAAGATAGTAACATAATGGAAGAGATTGAAAAGAAAGAAGAGGCTGTGCAGAATCCAGCTAAAGTAGAAGAAGACACAGAAATGCTGT CTGGCAAAGATTTTGAAGACAACAACAATTCCAGTAAAAAGGAACATGGCTGCAAAGAAAATGAAGCCAAGGATATTTTAGATATGCCAAAGTCCAATTC TCAGAATTCTTCGGCTGCCGATTCCGAGGATTCAAATGGCTTGGAAACCTTATGGGAGCATCAAGATTTGATAGAACAGCTCAAAATGGAACTGAAAAAG GTCAGAGCTACAGGTCTGCCAACCATTTTAGAAGAAGACGAATCACCGAAAATAATGGAAGATTTGAAGCCATGGAAAATTGATGAGAAGTTCCAGCATG AAGATAGAATGGGTGAGCTTCACAAGTTCTACAAGAGTTACAGAGAAAGAATGCGGAAATTTGATATCTTGAATTACCAGAAGATGTATGCAATGAGCTT TCTTCAATCGAAGGACCCACTTAAATCGATTACAAGGCGTGAAGCTTCAGCTCCAGCATTGACATCCCTTCTTTCGCAGAAATTCCTGCTAAGCAAGCGC AAAAAGTCCAGTTCTGACCCGATGGTGAACTTTATTAGGGAATTGCATAACGATTTGGAAGTGGTGTATGTTGGGCAACTGTGCCTCTCATGGGAAATCC TTCTTTGGCAGTATGAAAAAGCGCTAGAGCTATGGGATTCTGACCCTTATGGGATGCGACTCTACAATGAAGTCGCTGGTGAATTTCAACAGTTTCAAGT GCTGTTGCAGAGATTTATAGAGAATGAACCTTTTGAAGGTCCAAGGGTACAAAATTACATCAAGAATCGATGTGTGCTGCGTAATCTCCTTCAAGTTCCA GTAATAAGAGAGGACAGTATGAAGGATAAAAAGGCAAGAGGAAAAGGAAAAGATGGTGATTCAATTACAAGTGATATGCTAGTAGAGATCATGGAAGAAT CAATAAGAATTTTTTGGCAATTTGTTCGATCTGATAAAGATGCAGAAAATGTGATATCAAAGGGTCGCAAGGGAACTCAAATAGAACCCCAAGATCCCAC TGAGCTAGAGCTATTGACAGAAGTTCGAACAAGTCTTCAAAAGAAGGAGAAAAGGCTTAAAGACATTTGGAGAAGTGGAAACTGCATATTGAAGAAGTTC CAAAAACATCAAGGGGACAACTCTGATCAAGTTCTTTGCTTCTTCTCTCAAGTGGATATAAATTTAGTATCAAGGGTTCTGAACATGTCCAAAGTAACAA CGGATCAGCTACTGTGGTGTCACAATAAATTGAGCAAGATAAATTTTATTAACCGGAAGATCCATGTAGAACATTCATTTTTGCTTTTTCCATGTTGA
AA sequence Show only first row Show all	>Potri.004G126800.1 pacid=42793814 polypeptide=Potri.004G126800.1.p locus=Potri.004G126800 ID=Potri.004G126800.1.v4.1 annot-version=v4.1 MGSVNAFLNKKLLPFAASFWLSVSTLFLSLFGFFDRTMFRVKSDKSLEAKEPEVEVSEFKGAKEMNELEEKERPSKKEAKEPEVGVSEFMETKEVDELEE KETPKFFFKFQFQTYREEDEPVLLSSVPPTSTNKYEFLSERDFSHYLEKPEVVSLTVKELYAGSNGEFFANKKIMEDGVLSDKDFAEKESESEAESVREE IKEISADSVRDEYDASRDDDAPLLTEKDFILSDSIVSSHEFMSRYVASTSDGFLSHKDFEDVFGLDILKEIDGQTEESTDENLELEYLDLKNLNAGYEAD DFDEEDSNIMEEIEKKEEAVQNPAKVEEDTEMLSGKDFEDNNNSSKKEHGCKENEAKDILDMPKSNSQNSSAADSEDSNGLETLWEHQDLIEQLKMELKK VRATGLPTILEEDESPKIMEDLKPWKIDEKFQHEDRMGELHKFYKSYRERMRKFDILNYQKMYAMSFLQSKDPLKSITRREASAPALTSLLSQKFLLSKR KKSSSDPMVNFIRELHNDLEVVYVGQLCLSWEILLWQYEKALELWDSDPYGMRLYNEVAGEFQQFQVLLQRFIENEPFEGPRVQNYIKNRCVLRNLLQVP VIREDSMKDKKARGKGKDGDSITSDMLVEIMEESIRIFWQFVRSDKDAENVISKGRKGTQIEPQDPTELELLTEVRTSLQKKEKRLKDIWRSGNCILKKF QKHQGDNSDQVLCFFSQVDINLVSRVLNMSKVTTDQLLWCHNKLSKINFINRKIHVEHSFLLFPC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G39785			Protein of unknown function (D...		Potri.004G126800 [exp]	0	1
AT1G27920		MAP65-8	microtubule-associated protein...		Potri.003G173300 [exp]	3.16	0.9211
AT1G72220			RING/U-box superfamily protein...		Potri.002G101800 [exp]	4.24	0.9211
AT5G42710			unknown protein		Potri.002G261700 [exp]	4.24	0.9029
AT3G03770			Leucine-rich repeat protein ki...		Potri.013G064300 [exp]	7.41	0.8952
AT1G30900		VSR6, VSR3;3, B...	VACUOLAR SORTING RECEPTOR 3;3,...		Potri.003G155200 [exp]	9.74	0.9042
AT3G49260		IQD21	IQ-domain 21 (.1.2.3)		Potri.015G012500 [exp]	11.22	0.8997
AT3G03550			RING/U-box superfamily protein...		Potri.013G073500 [exp]	11.66	0.9001
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Potri.017G016700 [exp]	11.66	0.9074
AT4G29230	NAC	ANAC075, NST9	NAC domain containing protein ...		Potri.018G068700 [exp]	11.83	0.8825
AT5G16490		RIC4	ROP-interactive CRIB motif-con...		Potri.002G233400 [exp]	12.48	0.8934	Pt-RIC2.2

Compare expression of checked genes

Potri.004G126800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.