Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26870 308 / 1e-101 NAC FEZ, ANAC009 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT5G39820 303 / 5e-101 NAC ANAC094 NAC domain containing protein 94 (.1) AT2G43000 224 / 4e-71 NAC ANAC042, JUB1, JUNGBRUNNEN1 NAC domain containing protein 42 (.1) AT3G12910 203 / 2e-62 NAC NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT3G15510 188 / 5e-56 NAC ATNAC2, ANAC056, NARS1 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) AT3G04070 184 / 2e-54 NAC ANAC047 NAC domain containing protein 47 (.1.2) AT1G61110 182 / 3e-54 NAC ANAC025 NAC domain containing protein 25 (.1) AT2G02450 182 / 1e-53 NAC LOV1, ANAC034, ANAC035 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) AT4G27410 177 / 2e-52 NAC RD26, ANAC072 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) AT1G69490 175 / 4e-52 NAC NAP, ANAC029, ATNAP Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G082000 [exp] 731 / 0 AT1G26870 299 / 3e-98 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.002G057200 [exp] 231 / 2e-73 AT2G43000 282 / 4e-95 NAC domain containing protein 42 (.1) Potri.001G080900 [exp] 229 / 1e-72 AT2G43000 257 / 3e-85 NAC domain containing protein 42 (.1) Potri.007G066300 [exp] 229 / 2e-72 AT3G12910 269 / 2e-89 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.003G149700 [exp] 228 / 6e-72 AT2G43000 245 / 2e-80 NAC domain containing protein 42 (.1) Potri.005G205400 [exp] 228 / 7e-72 AT2G43000 269 / 6e-90 NAC domain containing protein 42 (.1) Potri.005G098000 [exp] 221 / 2e-69 AT3G12910 271 / 2e-90 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.011G046700 [exp] 198 / 6e-60 AT1G61110 331 / 8e-113 NAC domain containing protein 25 (.1) Potri.004G038000 [exp] 196 / 3e-59 AT1G61110 332 / 3e-113 NAC domain containing protein 25 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007263 [exp] 333 / 1e-112 AT5G39820 300 / 3e-100 NAC domain containing protein 94 (.1) Lus10015367 [exp] 332 / 3e-112 AT1G26870 298 / 8e-99 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10037178 [exp] 325 / 1e-107 AT5G39820 306 / 3e-101 NAC domain containing protein 94 (.1) Lus10036749 [exp] 324 / 1e-107 AT1G26870 306 / 4e-100 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10030478 [exp] 310 / 2e-102 AT5G39820 297 / 4e-98 NAC domain containing protein 94 (.1) Lus10031189 [exp] 223 / 2e-69 AT3G12910 264 / 9e-87 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10031767 [exp] 215 / 3e-68 AT2G43000 236 / 3e-78 NAC domain containing protein 42 (.1) Lus10038332 [exp] 209 / 6e-65 AT2G43000 231 / 1e-75 NAC domain containing protein 42 (.1) Lus10036194 [exp] 196 / 3e-60 AT3G12910 224 / 1e-72 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10007410 [exp] 192 / 7e-58 AT3G15510 241 / 1e-78 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.004G126901.1 pacid=42795019 polypeptide=Potri.004G126901.1.p locus=Potri.004G126901 ID=Potri.004G126901.1.v4.1 annot-version=v4.1 ATGGACGAGAAGAATGATGTTGATAAGATTGATGATGTGATGTTGCCTGGATTTCGGTTTCATCCGACTGATGAAGAGCTTGTTGGGTTCTATCTCAAAA GAAAGATACAGCAGCGATCTCTTCCTATTGAGCTGATTAAGCAAGTTGATATTTATAAATATGATCCCTGGGATCTTCCAAAAGAGCTGGCAACTACAGG GGAGAAAGAGTTGTACTTTTACTGCCCAAGGGACCGTAAATACAGGAACAGTGCAAGGCCAAATCGAGTTACGGGAGCTGGGTTTTGGAAGGCGACTGGA ACAGACCGTCCCATTTATTCCTCTGATGGCACCGAGTGCATAGGCTTGAAGAAGTCTCTGGTGTTCTACAGAGGTAGAGCAGCTAAAGGGATCAAAACTG ACTGGATGATGCACGAGTTTCGGCTACCTTCTCTTGCAGAACCATCACCACCAAAGAAGCTCCTAGACAAAAGCCTTCCTGCAAATGATGCGTGGGCTAT TTGTAGGATATTCAAGAAAACCAATTCCATGGCACAAAGAGCTCTTTCTCACTCTTGGGTCTCTCCATTACCAGACACTACTGCTTCTGATTTATTTGCT CAAGGGGCACACTTCCCTCAGTTCTGTTCAGAGAACATGTCTTGCGTAACTGAAATAGGATCAAGTTTCCATATAGGCTCCAATAGTGACTTCCAGCAGG CCTCTCCTGCTAGTTTCTCTGTTCTAGACATACCCTCTTACAAACCTATTAACCCCGCAGTCTACAAATCATATCTATGCCCTGTATCAAATGGTGACCT TTCCAACAACTTCTTATGTTCACAACTCGAGATTTCGGGTCCCATAAAGTCTACAGATGATGCTCATTCCATGCTCTTGAACCCTGCCTTGATAGGTGAA GCTGGTAAAACTTCTGAGAGCATAGAATATGAAGGGTCACAGCAGCAGTTCAATGGATTCTCGATCAATTTGCTACAAGAAATGCAAGGTAATACGGGTA CAGGAGATGATGAGGCAGGTTTTAGAAAGAATCCAAGTTCAATTCATGAAAATAACCTGGTGGGGACTATTCGATCGATTGGATTTCCCTTCAGCTTGCC TTCAAACTTGGCTGATGCATGGAAGTCTAATCTGGCATGGGATTCACCATCCTGCCACAGTGAGATGTCCACCACTTATTCCACAAACAAATGTAATACT TAA
AA sequence Show only first row Show all	>Potri.004G126901.1 pacid=42795019 polypeptide=Potri.004G126901.1.p locus=Potri.004G126901 ID=Potri.004G126901.1.v4.1 annot-version=v4.1 MDEKNDVDKIDDVMLPGFRFHPTDEELVGFYLKRKIQQRSLPIELIKQVDIYKYDPWDLPKELATTGEKELYFYCPRDRKYRNSARPNRVTGAGFWKATG TDRPIYSSDGTECIGLKKSLVFYRGRAAKGIKTDWMMHEFRLPSLAEPSPPKKLLDKSLPANDAWAICRIFKKTNSMAQRALSHSWVSPLPDTTASDLFA QGAHFPQFCSENMSCVTEIGSSFHIGSNSDFQQASPASFSVLDIPSYKPINPAVYKSYLCPVSNGDLSNNFLCSQLEISGPIKSTDDAHSMLLNPALIGE AGKTSESIEYEGSQQQFNGFSINLLQEMQGNTGTGDDEAGFRKNPSSIHENNLVGTIRSIGFPFSLPSNLADAWKSNLAWDSPSCHSEMSTTYSTNKCNT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G39820	NAC	ANAC094	NAC domain containing protein ...		Potri.004G126901 [exp]	0	1
AT5G42650		CYP74A, AOS, DD...	DELAYED DEHISCENCE 2, CYTOCHRO...		Potri.004G149000 [exp]	2.82	0.9748	Pt-AOS.4,CYP74C7-1
AT5G44640		BGLU13	beta glucosidase 13 (.1)		Potri.001G015100 [exp]	3.46	0.9694	Pt-L1.1
					Potri.002G012433 [exp]	5.47	0.9553
AT1G68040			S-adenosyl-L-methionine-depend...		Potri.008G136300 [exp]	5.91	0.9619
AT5G60520			Late embryogenesis abundant (L...		Potri.009G012600 [exp]	6.92	0.9651
AT5G01750			Protein of unknown function (D...		Potri.016G131600 [exp]	7.74	0.9423
AT3G62760		ATGSTF13	Glutathione S-transferase fami...		Potri.014G132200 [exp]	8.77	0.9523	Pt-ATGSTF13.1
AT4G37710			VQ motif-containing protein (....		Potri.007G006200 [exp]	8.94	0.9593
AT5G14020			Endosomal targeting BRO1-like ...		Potri.001G323600 [exp]	9.16	0.9175
AT5G20260			Exostosin family protein (.1)		Potri.006G064600 [exp]	9.48	0.9589

Compare expression of checked genes

Potri.004G126901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.