Plant FIBer expression Database

LAP1.3 (Potri.004G127400) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol LAP1.3
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G39570 139 / 2e-37 unknown protein
AT3G29075 105 / 2e-25 glycine-rich protein (.1)
AT1G11440 57 / 1e-08 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G087200
[exp]
284 / 1e-91 AT5G39570 112 / 3e-27 unknown protein
Potri.004G029500
[exp]
49 / 2e-06 AT1G11440 68 / 2e-13 unknown protein
Potri.011G032700
[exp]
47 / 1e-05 AT1G11440 71 / 1e-13 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029322
[exp]
146 / 8e-41 AT5G39570 144 / 2e-40 unknown protein
Lus10016220
[exp]
93 / 1e-20 AT5G39570 82 / 7e-17 unknown protein
Lus10018397
[exp]
53 / 2e-07 AT1G11440 98 / 2e-23 unknown protein
Lus10007616
[exp]
52 / 2e-07 AT1G11440 100 / 2e-24 unknown protein
Lus10010622
[exp]
46 / 7e-06 ND 39 / 4e-04
Lus10017294
[exp]
47 / 1e-05 ND 39 / 0.001
PFAM info
Representative CDS sequence
>Potri.004G127400.1 pacid=42795519 polypeptide=Potri.004G127400.1.p locus=Potri.004G127400 ID=Potri.004G127400.1.v4.1 annot-version=v4.1
ATGCCGTTCTTTTCTCGAGGTGATGATGACCAGGTCGACGATTACGATGAGTACGATCCCACCCCATACGGTGGCGGATACGACATTGCCTTAACGTACG
GTCGCCCAATCCCACCGTCTGATGAGACCTGCTATCCAATCAGCTCAGCCTCCGGTGAAATTGACTACGATCGCCCCAATTACTCCTCTTACTCTGAGCC
ATCTGCTTACGCTGATGAAGCTCTTGAAACTGAATACAGCAGCTATGCTCGTCCCAAGCCCCGACCTGGATCCACTTATGGTGAACCTCAACCGGCATAC
GGTTTCCAGCCTGGAATGAATAGGCCCGGATTGGAGTATGAGTCTGATGGCTATGTGAAGCCGGCCAATGAGGAATATGGAAGGAGACCCGAATCTGAAT
ATGGGTCTGGTGGGTATGGCAAGCCTCAAAGTGAAGAATATCGATCTGGGTATGGAAGGAGACCCGAAAGTGAATATGAGTCTGGTGGGCATGTGAGGCC
AAGCGAGTACGGGTCTGGTGATGGGCGCAGACAAGAATCAGAGTACGGGTCTGGGAATGCGAGGCCACAGAGTGAGGAATATGGATCTGGGTATGGAAGG
AGACCCGAGGGCGAATATGAGTCTGGTGGGTATGAGAAGCCGAGCGAGTATGGGACTGGTTATGGGCGCAGAAAAGAATCGGAGTACGGGTCTGGGTATG
AGAAGCCACAGAGTGATGAATATGGATCTGGGTATGGCAGGAGACCGGACTCTGAATATGGGTCTGGATATGAGAAGCCAACTGAGTATGGGTCGGGTTA
TGGTAGGAAATCCGAAACTGAATATGGATCTGGGTATGAGAAGCCCAGCGAATATGGAGGGGGGACTGTGGAATACGGATCCGGGTATGGGAGGAGGCCA
GGATCCGAAAATGAAGGAAGTGGGTCAGAGTATGGTTCTCGGTACGGGAGGAAGGAGAGTTATGGGGAAGAGGGAGAAGGGCATGGGGGAAGGAGCCAAT
ATGAGAAGCCAAGTTATGGAGATGATTCACCTAAGAGGTCTAGTTATGCGAGACAGGAGGAAGGAGGAGAGTATGAGAGGCCTTCTTATGGGAGTCGTCG
TAGTGATGAGGACGACGAGGATCGTCATAATAAGTATCGTGATGGTGGTGAAGAGGGCTATGGCCGCAAGAAATATGGAGATGACAATTCTGATGATGAT
GCGGAGAAGAAGCACCGCCACCACCGAAAGAATTATGATGATGAGTGA
AA sequence
>Potri.004G127400.1 pacid=42795519 polypeptide=Potri.004G127400.1.p locus=Potri.004G127400 ID=Potri.004G127400.1.v4.1 annot-version=v4.1
MPFFSRGDDDQVDDYDEYDPTPYGGGYDIALTYGRPIPPSDETCYPISSASGEIDYDRPNYSSYSEPSAYADEALETEYSSYARPKPRPGSTYGEPQPAY
GFQPGMNRPGLEYESDGYVKPANEEYGRRPESEYGSGGYGKPQSEEYRSGYGRRPESEYESGGHVRPSEYGSGDGRRQESEYGSGNARPQSEEYGSGYGR
RPEGEYESGGYEKPSEYGTGYGRRKESEYGSGYEKPQSDEYGSGYGRRPDSEYGSGYEKPTEYGSGYGRKSETEYGSGYEKPSEYGGGTVEYGSGYGRRP
GSENEGSGSEYGSRYGRKESYGEEGEGHGGRSQYEKPSYGDDSPKRSSYARQEEGGEYERPSYGSRRSDEDDEDRHNKYRDGGEEGYGRKKYGDDNSDDD
AEKKHRHHRKNYDDE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G39570 unknown protein Potri.004G127400
[exp]
0 1 LAP1.3
AT1G18190 GC2 golgin candidate 2 (.1) Potri.015G039800
[exp]
13.30 0.7909
AT5G42350 Galactose oxidase/kelch repeat... Potri.002G007700
[exp]
13.52 0.7963
AT2G42040 unknown protein Potri.006G193500
[exp]
20.83 0.7951
AT5G13100 unknown protein Potri.001G059700
[exp]
21.21 0.7723
AT5G58060 ATYKT61, ATGP1,... SNARE-like superfamily protein... Potri.006G187700
[exp]
28.14 0.7848
AT4G30600 signal recognition particle re... Potri.006G183600
[exp]
40.39 0.7697
AT1G19430 S-adenosyl-L-methionine-depend... Potri.002G260600
[exp]
44.63 0.7668
AT5G42360 Galactose oxidase/kelch repeat... Potri.005G253500
[exp]
46.63 0.7291
AT1G05150 Calcium-binding tetratricopept... Potri.002G027900
[exp]
52.82 0.7253
AT1G60940 SNRK2-10, SNRK2... SNF1-RELATED KINASE 2B, SUCROS... Potri.004G218001
[exp]
54.22 0.7540

Potri.004G127400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.