Plant FIBer expression Database

Potri.004G127420 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G05800 92 / 5e-21 unknown protein
AT3G11290 81 / 5e-17 unknown protein
AT3G11310 64 / 2e-11 unknown protein
AT2G24960 56 / 7e-09 unknown protein
AT2G19220 51 / 3e-07 unknown protein
AT4G02210 44 / 5e-05 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G074066
[exp]
478 / 2e-172 AT5G05800 92 / 1e-20 unknown protein
Potri.001G370432
[exp]
358 / 2e-125 AT5G05800 95 / 6e-22 unknown protein
Potri.008G189300
[exp]
340 / 2e-119 AT5G05800 87 / 1e-19 unknown protein
Potri.006G116400
[exp]
326 / 2e-112 AT5G05800 97 / 3e-22 unknown protein
Potri.014G061450
[exp]
308 / 3e-105 AT5G05800 111 / 2e-27 unknown protein
Potri.001G339400
[exp]
301 / 1e-102 AT5G05800 107 / 6e-26 unknown protein
Potri.010G190650
[exp]
291 / 1e-98 AT5G05800 104 / 6e-25 unknown protein
Potri.014G056100
[exp]
288 / 4e-98 AT3G11310 / unknown protein
Potri.007G118701
[exp]
281 / 4e-95 AT5G05800 109 / 6e-27 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014257
[exp]
74 / 8e-15 AT3G14820 282 / 1e-89 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Lus10025958
[exp]
68 / 7e-13 AT2G24960 102 / 4e-24 unknown protein
Lus10016838
[exp]
61 / 5e-11 AT2G24960 71 / 4e-14 unknown protein
Lus10002039
[exp]
52 / 2e-07 AT3G11290 91 / 2e-20 unknown protein
Lus10024329
[exp]
47 / 1e-05 AT5G05800 81 / 7e-17 unknown protein
Lus10026250
[exp]
46 / 2e-05 AT2G24960 750 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0123 HTH PF12776 Myb_DNA-bind_3 Myb/SANT-like DNA-binding domain
Representative CDS sequence
>Potri.004G127420.1 pacid=42794872 polypeptide=Potri.004G127420.1.p locus=Potri.004G127420 ID=Potri.004G127420.1.v4.1 annot-version=v4.1
ATGGACGATTCTCAATCACAAGATAAGGCTTGTTGGACTAGAGAGATGTTGCACGCTTTTTGTGACATATGTATTAAAGCAATTGAGCAAGGTATGCGAC
CCAACACACATTTCGACAAAGCTGGGTGGAAATATGTTATGAATTGCTTTAAGGATAAAACTGGCCATGCATTAACGAAAGCACAATTAAAGAATAAGTG
GGACGTAATTAAAAAAGATTGGAGAATATGGAAAAAGTTGATTTCCGAAACAGGAGTAGGATGGAGTGCTGAACTGGGAACAATTGCGGCTCCTGATGAA
TGGTGGAAAGCTAAAAACCAGGAGATACGCGGAGCAAGAAAGTTTAGGCATGTTGGCATCGATCCAACATTGTGTAGTAAATATGATATCATGTTTACAA
ACACTGTTGCTACCGGTCAGTATGCTTGGGCTCCATCACAGGGTCTGAATTCTGATGAAGATGGTGTCGGTGAAAGGCAAACTAACGTAGGAAATGAGGA
CCCTGAGCTGCAGGAAGGTAGTGGAGATTCTGAGGAGGATAGTCTACCAAATTTTGTTGCCAATGTCAATAATATGGTGGCTGGTGTCAATTTTTCCAAC
AGCACAAGCAATCCCACTGGTAGTAGTGGGAAGAGAAAAGGTGTGCAACAAAGTTCCCAACAAAATTTGAAAAAAAAAAGGGGTGCCGGAAGGGGATCGC
ATTTGTTTGCGCGATTAGATAAGTTAGTTGATAGTGTGTCTACCAAGAGTGAATGCACGTCAAATGTTTTTGATAAAAAAGGATGTAGCATAGAAGAGTA
A
AA sequence
>Potri.004G127420.1 pacid=42794872 polypeptide=Potri.004G127420.1.p locus=Potri.004G127420 ID=Potri.004G127420.1.v4.1 annot-version=v4.1
MDDSQSQDKACWTREMLHAFCDICIKAIEQGMRPNTHFDKAGWKYVMNCFKDKTGHALTKAQLKNKWDVIKKDWRIWKKLISETGVGWSAELGTIAAPDE
WWKAKNQEIRGARKFRHVGIDPTLCSKYDIMFTNTVATGQYAWAPSQGLNSDEDGVGERQTNVGNEDPELQEGSGDSEEDSLPNFVANVNNMVAGVNFSN
STSNPTGSSGKRKGVQQSSQQNLKKKRGAGRGSHLFARLDKLVDSVSTKSECTSNVFDKKGCSIEE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G05800 unknown protein Potri.004G127420
[exp]
0 1
AT1G52950 Nucleic acid-binding, OB-fold-... Potri.001G165480
[exp]
16.30 0.7144
AT5G05800 unknown protein Potri.001G370432
[exp]
24.39 0.6897
Potri.018G077983
[exp]
26.49 0.6774
AT5G05800 unknown protein Potri.008G074066
[exp]
28.84 0.7583
AT3G63230 Protein of unknown function (D... Potri.002G050100
[exp]
33.94 0.6617
Potri.011G125251
[exp]
34.58 0.7199
AT4G21410 CRK29 cysteine-rich RLK (RECEPTOR-li... Potri.011G030300
[exp]
37.08 0.6472
Potri.006G143901
[exp]
46.73 0.7202
AT1G80580 AP2_ERF Integrase-type DNA-binding sup... Potri.001G313500
[exp]
54.99 0.6771 ERF52
AT5G05800 unknown protein Potri.010G132850
[exp]
63.30 0.6357

Potri.004G127420 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.