Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39860 124 / 8e-39 bHLH BNQ1, BHLH136, PRE1 PACLOBUTRAZOL RESISTANCE1, BANQUO 1, BASIC HELIX-LOOP-HELIX PROTEIN 136, basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT3G28857 120 / 2e-37 bHLH PRE5 Paclobutrazol Resistance 5, basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT1G26945 114 / 9e-35 bHLH KDR, PRE6 KIDARI, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G15160 107 / 4e-32 bHLH BNQ2, BHLH134, PRE2 BASIC HELIX-LOOP-HELIX PROTEIN 134, BANQUO 2 (.1) AT1G74500 100 / 3e-29 bHLH TMO7, PRE3, ATBS1, bHLH135 TARGET OF MONOPTEROS 7, activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 (.1) AT3G47710 92 / 4e-26 bHLH BNQ3, PRE4, bHLH161 BASIC HELIX-LOOP-HELIX PROTEIN 161, BANQUO 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G081300 [exp] 147 / 8e-48 AT5G39860 126 / 1e-39 PACLOBUTRAZOL RESISTANCE1, BANQUO 1, BASIC HELIX-LOOP-HELIX PROTEIN 136, basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.012G069500 [exp] 110 / 4e-33 AT1G74500 81 / 2e-21 TARGET OF MONOPTEROS 7, activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 (.1) Potri.015G063300 [exp] 109 / 7e-33 AT1G74500 75 / 3e-19 TARGET OF MONOPTEROS 7, activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036732 [exp] 107 / 1e-31 AT1G26945 115 / 6e-35 KIDARI, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10037198 [exp] 103 / 1e-30 AT1G26945 114 / 1e-34 KIDARI, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10024241 [exp] 101 / 9e-30 AT3G47710 123 / 2e-38 BASIC HELIX-LOOP-HELIX PROTEIN 161, BANQUO 3 (.1) Lus10023610 [exp] 101 / 1e-29 AT3G28857 109 / 9e-33 Paclobutrazol Resistance 5, basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10012842 [exp] 97 / 6e-28 AT3G28857 103 / 3e-30 Paclobutrazol Resistance 5, basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10030490 [exp] 94 / 2e-26 AT3G28857 102 / 4e-30 Paclobutrazol Resistance 5, basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10008626 [exp] 64 / 1e-14 AT3G28857 71 / 1e-17 Paclobutrazol Resistance 5, basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10030675 [exp] 59 / 6e-13 AT3G28857 61 / 8e-14 Paclobutrazol Resistance 5, basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10005248 [exp] 56 / 7e-12 AT3G28857 57 / 2e-12 Paclobutrazol Resistance 5, basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.004G128400.1 pacid=42795648 polypeptide=Potri.004G128400.1.p locus=Potri.004G128400 ID=Potri.004G128400.1.v4.1 annot-version=v4.1 ATGTCTAGCAGAAGGTCAAGGCAGTCTAGTGTTCCAAGGATCACTGATGATCAAATCATCCACCTTGTCTCCAAATTACGCCAGCTTCTCCCTGAGATTC GTCAAAGGCGCTCCGATAAGGTATCAGCTTCTAAGGTCCTACAAGAAACTTGCAACTATATCAAGAACTTGCATAGGGAGGTTGATGATTTAAGTGAGCG ATTGTCTCAGCTTTTGGCAACAATTGATTCTGATAGTCCTGAAGCTGAGATAATAAGGAGTTTAATTATGTAA
AA sequence Show only first row Show all	>Potri.004G128400.1 pacid=42795648 polypeptide=Potri.004G128400.1.p locus=Potri.004G128400 ID=Potri.004G128400.1.v4.1 annot-version=v4.1 MSSRRSRQSSVPRITDDQIIHLVSKLRQLLPEIRQRRSDKVSASKVLQETCNYIKNLHREVDDLSERLSQLLATIDSDSPEAEIIRSLIM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G39860	bHLH	BNQ1, BHLH136, ...	PACLOBUTRAZOL RESISTANCE1, BA...		Potri.004G128400 [exp]	0	1
AT1G29450			SAUR-like auxin-responsive pro...		Potri.009G141150 [exp]	9.16	0.9568
AT4G38840			SAUR-like auxin-responsive pro...		Potri.004G165450 [exp]	12.48	0.9295
AT5G23940		PEL3, DCR, EMB3...	PERMEABLE LEAVES3, EMBRYO DEFE...		Potri.015G147300 [exp]	13.19	0.9575
AT2G37630	MYB	AtPHAN, AtMYB91...	ARABIDOPSIS PHANTASTICA-LIKE 1...		Potri.017G112300 [exp]	17.66	0.9410
AT5G03120			unknown protein		Potri.006G130400 [exp]	22.97	0.9353
AT1G29730			Leucine-rich repeat transmembr...		Potri.016G012300 [exp]	22.97	0.9282
AT5G27780			SAUR-like auxin-responsive pro...		Potri.009G141201 [exp]	24.81	0.9258
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Potri.001G267700 [exp]	25.65	0.9103
					Potri.006G028000 [exp]	26.17	0.9458
AT4G38840			SAUR-like auxin-responsive pro...		Potri.004G165300 [exp]	26.32	0.9172

Compare expression of checked genes

Potri.004G128400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.