Plant FIBer expression Database

Potri.004G128501 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
ATCG00350 467 / 6e-160 ATCG00350.1, PSAA Photosystem I, PsaA/PsaB protein (.1)
ATCG00340 141 / 7e-37 ATCG00340.1, PSAB Photosystem I, PsaA/PsaB protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G141912
[exp]
467 / 4e-160 ATCG00350 1439 / 0.0 Photosystem I, PsaA/PsaB protein (.1)
Potri.007G062582
[exp]
372 / 4e-124 ATCG00350 1143 / 0.0 Photosystem I, PsaA/PsaB protein (.1)
Potri.007G061601
[exp]
353 / 2e-122 ATCG00350 470 / 2e-163 Photosystem I, PsaA/PsaB protein (.1)
Potri.016G089700
[exp]
295 / 5e-97 ATCG00350 638 / 0.0 Photosystem I, PsaA/PsaB protein (.1)
Potri.013G142124
[exp]
142 / 3e-37 ATCG00340 1412 / 0.0 Photosystem I, PsaA/PsaB protein (.1)
Potri.009G016401
[exp]
114 / 1e-31 ATCG00350 130 / 5e-37 Photosystem I, PsaA/PsaB protein (.1)
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00223 PsaA_PsaB Photosystem I psaA/psaB protein
Representative CDS sequence
>Potri.004G128501.1 pacid=42795353 polypeptide=Potri.004G128501.1.p locus=Potri.004G128501 ID=Potri.004G128501.1.v4.1 annot-version=v4.1
ATGTTTGTTGAACAACTGATAAAAAAGAAGGATGATGCTCACGATTTCGATAGCCATACCAGTGATTTGGAAGAGATCTCCCGAAAAGTCTTTAGTGCTC
ATTTCGGCGAACTCTCCATCATCTTTCTTTGGCTGAGTGGCATGTATTTCCACGGTGCTCGTTTTTCCAATTATAAAGCATGGCTAAGCGATCCTACTCA
CATTGGGCCTAGCGCCCAAGTAGTTTGGCCAATAGTGGGCCAAGAAATATTGAATGGTGATGTGGGTGGGGGTTTCCGAGGAATACAAATAACCTCCAGG
TTTTTTCAGATTTGGAGAGCATCTGGAATAACTAGTGAATTACAATTGTATTGTACGACAATTGGTGCATTAGTCTTTGCAGCCTTAATGCTTTTTGCTG
GTTGGTTCCCTTATCACAAAGCTGCTCTAAAATTGGCTTGGTTCCAAAATGTAGAATCTATGTTAAATCACCATTTAGCAGGGCTACTAGGGCTTGGGTC
TCTTTCTTGGGCGGGGCATCAAGTCCATGTATCTTTACCAATTAACCAATTTCTAAACGCTGGAGTAGATCCTAAAGAGATCCCACTTCCTCATGAATTT
ATCTTGAACCGGGATCTTTTGGCTCAACTTTATCCCAGTTTTGCTGAGGGAGCAACCCCATTTTTCACTTTGAATTGGTCAAAATATTCGGAATTTCTTA
CTTTTTGTGGAGGATTAGACCCAGTAACTGGGAGTCTATGGCTGACCGATATTGCACACCACCATTTAGTTATTGCAATTCTTTTCCTGCAAAGCAGTTT
TCCCTGCCGAATTGTGGTGTCCGTAGCAAACCAGTCTTCGCCGGTGAATTGTGGCGTTAGCAGCAAACCAGTCTTTGCTGGTGAATTCTATGTCCGTAGC
AATTTAGTTTTCGATGTCGAATCCTATGGCAGCAGCGAATCAGTTTTCATTGTTGAGTTCCATGTCACCACAAAATTAGTTTTCATTGCCGAATTCTCCA
GCGAATCAGTTTTCGCTGTTGAACTGTATGTCAACAGGGAATCAGTTTTGCTGCCAAAATATATATGTCACCAACCAATCAGTTTCGCTACTAAATTCTG
TATAACCAGCGAATAA
AA sequence
>Potri.004G128501.1 pacid=42795353 polypeptide=Potri.004G128501.1.p locus=Potri.004G128501 ID=Potri.004G128501.1.v4.1 annot-version=v4.1
MFVEQLIKKKDDAHDFDSHTSDLEEISRKVFSAHFGELSIIFLWLSGMYFHGARFSNYKAWLSDPTHIGPSAQVVWPIVGQEILNGDVGGGFRGIQITSR
FFQIWRASGITSELQLYCTTIGALVFAALMLFAGWFPYHKAALKLAWFQNVESMLNHHLAGLLGLGSLSWAGHQVHVSLPINQFLNAGVDPKEIPLPHEF
ILNRDLLAQLYPSFAEGATPFFTLNWSKYSEFLTFCGGLDPVTGSLWLTDIAHHHLVIAILFLQSSFPCRIVVSVANQSSPVNCGVSSKPVFAGEFYVRS
NLVFDVESYGSSESVFIVEFHVTTKLVFIAEFSSESVFAVELYVNRESVLLPKYICHQPISFATKFCITSE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
ATCG00350 ATCG00350.1, PS... Photosystem I, PsaA/PsaB prote... Potri.004G128501
[exp]
0 1
ATCG00350 ATCG00350.1, PS... Photosystem I, PsaA/PsaB prote... Potri.007G062582
[exp]
2.00 0.9444
ATCG00340 ATCG00340.1, PS... Photosystem I, PsaA/PsaB prote... Potri.013G142124
[exp]
5.19 0.9415
ATCG00490 ATCG00490.1, RB... ribulose-bisphosphate carboxyl... Potri.013G162700
[exp]
5.74 0.8809
ATCG00350 ATCG00350.1, PS... Photosystem I, PsaA/PsaB prote... Potri.013G141912
[exp]
7.34 0.9262
ATCG00350 ATCG00350.1, PS... Photosystem I, PsaA/PsaB prote... Potri.007G061601
[exp]
11.48 0.8668
ATCG00700 ATCG00700.1, PS... photosystem II reaction center... Potri.011G113700
[exp]
11.83 0.7952
ATCG00350 ATCG00350.1, PS... Photosystem I, PsaA/PsaB prote... Potri.007G061621
[exp]
12.00 0.8616
ATCG00680 ATCG00680.1, PS... photosystem II reaction center... Potri.017G140700
[exp]
15.09 0.8437
ATCG00700 ATCG00700.1, PS... photosystem II reaction center... Potri.019G028300
[exp]
15.49 0.8428
ATCG00690 PSBTC, ATCG0069... photosystem II reaction center... Potri.011G113800
[exp]
15.96 0.8526

Potri.004G128501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.