Potri.004G128601 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G55160 2401 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015366 2751 / 0 AT3G55160 2264 / 0.0 unknown protein
Lus10007253 1568 / 0 AT3G55160 1318 / 0.0 unknown protein
Lus10007252 1197 / 0 AT3G55160 952 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF10350 DUF2428 Putative death-receptor fusion protein (DUF2428)
Representative CDS sequence
>Potri.004G128601.1 pacid=42796516 polypeptide=Potri.004G128601.1.p locus=Potri.004G128601 ID=Potri.004G128601.1.v4.1 annot-version=v4.1
ATGTCAGCGAAATGGCGCGCATTACAGCACCGCCACCGCTACACATACAGTGCTGTGATATTCCCGTCTTCCTTCACAGACACCTTGCTTTCTCAATCTC
TCCTTCCCTTAAACCCTAACTTCTCCCTTTTCTTCACCCAACTCAAAACCCTAATTTCACTCAATTCAATTTACTCTCAAGTAAACCACTCCAAAAACCT
CGCTTCCTCCTTCACCAACCTCCTATCTCTAATACACACCGAAAACGACACTCCGATTCTTCAAACGGCATGCCGTTTATACGTGGAAGTTTTGTTTCTG
GAAAATTCAGTGCCTTTACATCGAACTTTGATTTCTGGTTTATCAAAAGTGAGTAACAAGGATCGTCAGGTTTTGATTGTTGAGTGTTTTAGGGATTTAT
GTGAGGAGTACAAGAAATGGAGTAATAGAAAGAGGTTTTGTTTATCACGTGTTGCTTTATCAATTATGGGGATGCCAAAATTAGGGTTTTTGATTAGTGT
TGTTGGTGATTGTGCGGTTTTGATTGGCTGGGATGTTGTTTTGGGATTAGATAGTGTTTTTTCGGAGATTGAGGATTTGGGTGGTAGGCCATCTCCGGTT
GTTATGGAGCAATGTCAAGAGAGTTTGTCTTGCTTGTATTATTTGATCCAGCGGTTTCCGGGGACGTTTAAGTGTTTTGAAGAGGTGGGGTTTATGGAGA
GGGTTTTGGGGGTTTTGGTTAGTGTGTTGAAGTCGATGGCTTTTACTAGGGATTGCTTTGTGGCGGCTGGAGTGGCATTGTGTGCTGCTTTGCAAGTTTG
TCTTACTAGTGAAGAGCTTGGTTTGGTTATTGTTAAAGCTATATTTAATGGTATTACTTGTAGTTCCAGCGGTACTAATTGTTTTGAAAGTGAGTTTAGA
GATGTGATTTTGAAGGTTCCATTTAAAGGGGATTTGTGTTTTGAGATAAATGGTTTTTCTGGTTTGAGTCGGTTGTGCTTGATTAGGGGGATTCTTACTG
CTGTTTCGAGGGCTGTACTCAATTCCCAATTTGTTGTATCGAGTGGTGGTTTGAATGTTAATGAGGAAAATGGAAATTGTTGTGGCTCTGTTAAGACTAT
TTTGTATGATGGGATTTTGCCTGAGTTGTGTAATTATTGTGAGAACCCTATCGATAGTCATTTTAATTTTCATGCATTGACAGTGTTGCAAATTTGTTTG
CAACAGATGAAGACTTCAATGCTAAGTAATCTTACTGACATCTCGAATAATTATGAACCCATACCAGTAGAAATGGGGACACGGATACTGAAGATCATAT
GGAATAGCTTGGAAGATCCTTTAAGTCAAACAGTGAAACAAGTGCATCTGATTTTTGATCTGTTCTTAGATATTCAGTCATCTCTTCATTGGGGAGAGGG
AAGTGAAAGAATAAAATCTTTCTTGCAAAAAATTGCTTCAGATCTTCTCCGTCTAGGCACAGGCTGTAAGGGGAGATATGTTCCGTTAGCTTTGTTGACC
AAGAGGCTGGGGGCAAAAACTATACTGGATATGAGTCCTGATCTGCTGTTTGAAATTGTACAAGCTTACATTGATGATGATGTGTGCTGTGCTGCTACAA
CATTTTTGAAATGTTTCCTTGAGTGTTTGCGTGATGAGTGTTGGAACTGTAATGGGATTGAGGAAGGTTATGCGATTTATAGAGGGCATTGTTTGCCTCC
CTTTCTGTTTGGACTTGCTTCTGGTGTTTCAAAGCTTCGTTCAAATGTGAACACATATGCTTTGCCTGTTCTACTTGAAGTTGATGTAGATAGCATATTT
CCTATGCTTGCTTATATCTCAGTTGGGCTTATTGGGGCAGAAAATGAACTGTCATATCCCGAGCTCTCTGGTACAAATGTAGAACTGGGAGTCGAGCAAC
AAGTAGCTGTTTTAGTGTCCTTGGTAAAGGTATGCCGTTCACTTGCTCTAATTGAAGGCGACATTGATTTGTGGGATGCATCACAACCACTTCAGACAAA
TGGTATGCTGGGGACAGATAGTGTGAAACTCTATGCTCTTTTCTCCATAAAGGGGATAAAGGTTAAGGTCCATGTTGAATGGCTAGTATTGGCACTAAGA
CATGTTGACGAGTTACTCCGTGTAGATGCTGCAGAGTCTCTGTTCTTAAATCCCAAGACTTCTAGTATTCCTTCCTGTTTAGAACTCACGCTCTTGAAAG
AAGCTGTGCTGTTGAACATGAGGAGTTGCTCAACTGGTTTCCAAATGAAGTGGACCAGCTTGTTTAGAAAGTTCTTTGCTCGGGTTCGAACAGCCTTGGA
GAGACAACTTAAGCAGGGGAGCTGGCAACCCCTTCTGGATTGCAATAATAATGGAGCATACTCAAATAAAGGGATTGAAGAATCTTTAATTAAAAGGGCA
GAGAATCTTTTTAATTTTATGAGATGGCTGTCTTGTTTTCTTTTTTTTTCATGCTATCCCTCTGCTCCTTATAAGAGAAAAATAATGGCCATGGATCTTT
TACTCATAATGCTTAATGTTTGGCCTATTACACTGACTTCTCAAGATAAGGATGGGTCTCTTCGTCCTGAAAGTTCTCTCTATCCTTATAGCAAAGGAAT
AACCTTACCTGATTCAACGTTGTTATTAGTTGGATCTATCATTGATAGCTGGGACAGGCTGAGAGAGAGTTCTTTCCGCATATTGCTATATTTTCCCAAC
CCCCTTCCTGGGATATCAAGCAAGGACATGGTCCAGAAAGTGATCAATTGGGCTAAGAAGTTAGTTTGCAGTCCACGTGTCAGAGAGAGTGACGCTGGTG
CTCTGACTCTAAGGCTTTTGTTCCGGAAGTATGTGTTGGAGCTAGGATGGATACTTAGAGCTTCTGTTGATGTTGTTTGTTTTCAATCACAATCAGAGCT
GGTCAATGTTGATAGTCAAATTATTGAATCAAAGCCCCCTGTAGTAGAGTATATAAAATCACTAATTGATTGGCTGAATGCTTCTGTGGAAGAGGGAGAG
AGGAATCTTTCTGAAGCTTGCAAAAACAGCTTTGTTCATGGAGTTTTGCTGACCCTACGGTATACTTTTGAGGAATTGGATTGGAATTCAGATGCAGTCC
TGTCTAGCATTTCGGAAATGAGGCATGCATTGGAGAAGCTCCTGGAGCTTCTTGTGCGAATAACATCATTGGCACTTTGGGTGGTTTCTGCAGATGCTTG
GTATCTGGCAGACATGGATGAGATGGCTGACGATGATGTTTACTTGATGGATGAAATGGAGGTGGTAAGACCTTCAGAAGATGAAGGCATTAATTCAAAA
CATGTGCAGGACAGTAGACCATCGGAACAGATTGTCATGGTTGGTTGTTGGCTGGCTATGAAAGAGGTGAGTCTTCTTCTAGGAACCATCATAAGAAAAA
TTCCCTTACCAGGTTATAGTTACTCAGATTCGAAGTCTGAAGACCCATGTCCTGATGCCTCGATGCTGACAATACCTAATGCAATGCTTGATTTGCAACA
ACTTGAACAAATTGGAAACCACTTCTTGGAAGTCCTTCTGAAGATGAAGCACAATGGAGCGATTGATAAGACAAGAGTTGGATTCACTGCTCTTTGCAAC
CGCTTACTTTGCTCAAATGATCCGAGGCTTTGCAAGTTGACAGAAATTTGGATGGAACAACTGATGGAAAGAACTGTTGCCAAGGGTCAGGTTGTGGATG
ATTTGTTACGAAGAAGTGCTGGTATTCCCGCAGCATTTATTGCTCTCTTTCTGTCAGAGCCTGATGGTGCACCAAAGAAACTCCTTCCACGGGCATTACG
GTGGCTAATAGATGTAGCTAATAGCTCCTTGCTGTATCTGGTTGATGCCAAGAGCATGAATGGCGACTCCTGCAAGTTGTCATCGACAAATTCAGACCAA
GCACCTGATTCTGCAAAGCTGTATGGGGTGAATGTGATGGAAAAGACCTCAAAGATCCGAGATGAAGGTGTAATTCCGACAGTACATGCATTTAATGTTC
TCAGAGCTGCTTTTAATGATACAAACCTTGCAACTGATACATCTGGTTTTGCTGCGGAGGCTTTGATTGTCTCAATTCACTCTTTCTCTTCACCATATTG
GGAGGTCCGAAATAGTGCCTGTCTGGCATACACTGCCTTAGTACGACGCATGATAGGATTCCTAAATCTTCAAAAACGAGAATCTCGACGTTCACTAACT
GGGCTTGAGTTTTTTCACAGGTACCCCTCGTTGCATCCATTTCTTTTCAATGAGCTGAGTGTTGCAACTGATGCACTTGGGGATGCAACATCTGGATGCT
CAGAATCCAACTTATCAAAAGTCGTCCACCCAAGCTTGTGCCCTGTTTTAATTCTTTTATCCAGGCTCAAGCCTTCAACAATTGCTAGTGAGAGTGGAGA
TGACTTGGATCCATTCCTATTTATGCCATTCATCAGGAGGTGCTCAACCCAAAGTAATCTACGAATTCGTGTTCTTGCATCTAGAGCTTTAACAGGACTG
GTCTCCAATGAGAAACTGCCAACTGCCCTCCTGAATATTGGCTCTGAATTGCCTTGCGTGGAGAATCAAATTGCAGCTTCTTCTTTTCCCTCTTCCTTAT
TGAAACCAAGCAATGGAACAGTCTCTACTAATTATAATTCGATTCATGGAATGCTATTGCAACTGTGTTCTCTTCTAGATGCAAATTGCAGAAACCTTGC
TGATTTCACGAAGAAAGAGAAAATTCTTGGTGATCTGTTCCAAGTTCTAGCGAAGCGATCATGGATTGCAAGCCCCAAAAGGTGTCCTTGCCCTATCCTT
AATGGCTCTTTTGTAAGGGTGTTAGATCACATGCTCAGTGTTGCACAAACAGGCCATATCAGGGAGAATTACCTTCCCATCCGCAGTCTGCTGTGGAAGC
TATGTACAGAATGCTTAGATGTAGAAGATTCTTTTGGAGTGTCGTATTATGATCCAACAGTAGCAGAACTTCGTGAACAAGCAACCATATCCTATTTCAG
TTGTGTGCTCCAGGCATCTAAAGATGGCATGGAGGAGGTTCTTCAGAAGCCACAGGCACATTTATCACATGACTTAAAGTTGTTGAACCTCCCTGAAACA
AAGGAAACTTTTGTCTCACTCGAGAAAAGGCTGATTAGTTCCTTGACAGATTCATCATATGAAGTTCGACTTGCAACACTGAAGTGGCTGTTGAAGTTCC
TGAAGTCGACAGAATCTATCAGTGATGTCCACCATCTGTCTAGCAGTGCAATTGGAATTATTCAGCATTGGAGTAAGCCAAACCTCCAGGAGACAATGGT
TAAGCTCTTGGACTCGGAGAAGTATCATAGATGTAAATATTACATTCTGAGGATTCTTTACACTTGGAACTTGCTGCAGTTTCAGAAACCTGGAAACCAA
AATTCTGCTGATATTACATATGTTGGCAACTTAGATAATGATTCCACGTTTCAGTTCTGGGATAAGTTGTTATCCTTGTACAATATCACAAGACATAAAA
AGACAAGAGAGACACTCATCTGCTGCATGGCTATATGTGTGAAAAAGTTTTCAAGTTTATTAACCAGCAGTGTTCTGTCTTACATGGAGGAGGAAACTTC
AAAATCCTGTGAGTCATGTCAACTGGAAAGATCAGCACTTTTGTACGAATATATAACCCTTTTTGTCAACCTTATCAAAGAACACAGTTCTTCATCTGAG
CCAGTGACCAAGCGCAATGCAGCAGCAGAATCTATTATTGCATCTGGTTTGCTTGAACAAGCAGAACTTATTGGTTCTTGTGTGTTCAGTAATGAAATCC
CTGCTGGACTTTCTGGTTCCTGTTTTGAACCAAAAGAAGCTGTTAATATGTATGGTCGTCAGTTACTCGAGATATGGTTTACTTGCATCAAGTTGCTGGA
GGATGAAGATGATGCGATACGACAATGGCTCGCCTTGAATGTCCAGAAATGCTTTTCTTCAAAAGCTTCTGGAAGCAGCTTTCATGCTGTTGGGGTCCCA
ATGCAAGTGGAGAAAGTGATTGAATTGAGTTTTGGGTATCTATCTTATATCTTTGGTCACTGGATTGATTACTTTGATCATCTTTCACAGTGGGTAATAA
ATGGAGCAAATTATGTAACCTGTAAAGGAGATATTGTCAGACGGGTTTTTGACAAGGAAATTGACAATCATCATGAAGAGAAGCTGTTGATCTGTCAAAT
ATGCTGCTCTCATTTGGAACAGCTTCCAATTTCAAAATCGTGGTTGGCTGATGGGCCATTCAAGCAGAAGTTCACAAATTATTTATACAACTGGAGAAGG
AGATTTTGTCATCAGTTGACATCGTTTGCCAAGGACCATATTGAGAATTTGGGAGGAGTTGATTGGATAGGTGGTGTTGGTAACCACAAAGATGCATTTC
TACCAATATATGCAAATTTGCTTGGCTTTTATGCTCTCTCAAACTGCATGGTCAATAGGAATATCGAGGATGACATGCTTCTACTATCTCAAATTGTTGA
AATTGGTAAAACCATCGACCCATTCTTGAGGAATCCTTTGATTTCAAACCTATATTTGTTAGTTGTAAATTTGCATGAGAGAAAGGTCGGAGCCACTGCT
GACATGTTGACTAGTAAATTCATCATAGATGACTCGATTTGGGATGGTTTTGATCCCTATTTTCTTCTTAGGTAA
AA sequence
>Potri.004G128601.1 pacid=42796516 polypeptide=Potri.004G128601.1.p locus=Potri.004G128601 ID=Potri.004G128601.1.v4.1 annot-version=v4.1
MSAKWRALQHRHRYTYSAVIFPSSFTDTLLSQSLLPLNPNFSLFFTQLKTLISLNSIYSQVNHSKNLASSFTNLLSLIHTENDTPILQTACRLYVEVLFL
ENSVPLHRTLISGLSKVSNKDRQVLIVECFRDLCEEYKKWSNRKRFCLSRVALSIMGMPKLGFLISVVGDCAVLIGWDVVLGLDSVFSEIEDLGGRPSPV
VMEQCQESLSCLYYLIQRFPGTFKCFEEVGFMERVLGVLVSVLKSMAFTRDCFVAAGVALCAALQVCLTSEELGLVIVKAIFNGITCSSSGTNCFESEFR
DVILKVPFKGDLCFEINGFSGLSRLCLIRGILTAVSRAVLNSQFVVSSGGLNVNEENGNCCGSVKTILYDGILPELCNYCENPIDSHFNFHALTVLQICL
QQMKTSMLSNLTDISNNYEPIPVEMGTRILKIIWNSLEDPLSQTVKQVHLIFDLFLDIQSSLHWGEGSERIKSFLQKIASDLLRLGTGCKGRYVPLALLT
KRLGAKTILDMSPDLLFEIVQAYIDDDVCCAATTFLKCFLECLRDECWNCNGIEEGYAIYRGHCLPPFLFGLASGVSKLRSNVNTYALPVLLEVDVDSIF
PMLAYISVGLIGAENELSYPELSGTNVELGVEQQVAVLVSLVKVCRSLALIEGDIDLWDASQPLQTNGMLGTDSVKLYALFSIKGIKVKVHVEWLVLALR
HVDELLRVDAAESLFLNPKTSSIPSCLELTLLKEAVLLNMRSCSTGFQMKWTSLFRKFFARVRTALERQLKQGSWQPLLDCNNNGAYSNKGIEESLIKRA
ENLFNFMRWLSCFLFFSCYPSAPYKRKIMAMDLLLIMLNVWPITLTSQDKDGSLRPESSLYPYSKGITLPDSTLLLVGSIIDSWDRLRESSFRILLYFPN
PLPGISSKDMVQKVINWAKKLVCSPRVRESDAGALTLRLLFRKYVLELGWILRASVDVVCFQSQSELVNVDSQIIESKPPVVEYIKSLIDWLNASVEEGE
RNLSEACKNSFVHGVLLTLRYTFEELDWNSDAVLSSISEMRHALEKLLELLVRITSLALWVVSADAWYLADMDEMADDDVYLMDEMEVVRPSEDEGINSK
HVQDSRPSEQIVMVGCWLAMKEVSLLLGTIIRKIPLPGYSYSDSKSEDPCPDASMLTIPNAMLDLQQLEQIGNHFLEVLLKMKHNGAIDKTRVGFTALCN
RLLCSNDPRLCKLTEIWMEQLMERTVAKGQVVDDLLRRSAGIPAAFIALFLSEPDGAPKKLLPRALRWLIDVANSSLLYLVDAKSMNGDSCKLSSTNSDQ
APDSAKLYGVNVMEKTSKIRDEGVIPTVHAFNVLRAAFNDTNLATDTSGFAAEALIVSIHSFSSPYWEVRNSACLAYTALVRRMIGFLNLQKRESRRSLT
GLEFFHRYPSLHPFLFNELSVATDALGDATSGCSESNLSKVVHPSLCPVLILLSRLKPSTIASESGDDLDPFLFMPFIRRCSTQSNLRIRVLASRALTGL
VSNEKLPTALLNIGSELPCVENQIAASSFPSSLLKPSNGTVSTNYNSIHGMLLQLCSLLDANCRNLADFTKKEKILGDLFQVLAKRSWIASPKRCPCPIL
NGSFVRVLDHMLSVAQTGHIRENYLPIRSLLWKLCTECLDVEDSFGVSYYDPTVAELREQATISYFSCVLQASKDGMEEVLQKPQAHLSHDLKLLNLPET
KETFVSLEKRLISSLTDSSYEVRLATLKWLLKFLKSTESISDVHHLSSSAIGIIQHWSKPNLQETMVKLLDSEKYHRCKYYILRILYTWNLLQFQKPGNQ
NSADITYVGNLDNDSTFQFWDKLLSLYNITRHKKTRETLICCMAICVKKFSSLLTSSVLSYMEEETSKSCESCQLERSALLYEYITLFVNLIKEHSSSSE
PVTKRNAAAESIIASGLLEQAELIGSCVFSNEIPAGLSGSCFEPKEAVNMYGRQLLEIWFTCIKLLEDEDDAIRQWLALNVQKCFSSKASGSSFHAVGVP
MQVEKVIELSFGYLSYIFGHWIDYFDHLSQWVINGANYVTCKGDIVRRVFDKEIDNHHEEKLLICQICCSHLEQLPISKSWLADGPFKQKFTNYLYNWRR
RFCHQLTSFAKDHIENLGGVDWIGGVGNHKDAFLPIYANLLGFYALSNCMVNRNIEDDMLLLSQIVEIGKTIDPFLRNPLISNLYLLVVNLHERKVGATA
DMLTSKFIIDDSIWDGFDPYFLLR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G55160 unknown protein Potri.004G128601 0 1
AT1G72440 SWA2, EDA25 SLOW WALKER2, embryo sac devel... Potri.001G164100 4.69 0.7995
AT2G34780 EMB1611, MEE22 EMBRYO DEFECTIVE 1611, materna... Potri.011G161901 6.70 0.7720
AT5G64420 DNA polymerase V family (.1) Potri.009G079900 8.94 0.7686
AT2G46040 ARID ARID/BRIGHT DNA-binding domain... Potri.014G086700 10.81 0.7288
AT4G02400 U3 ribonucleoprotein (Utp) fam... Potri.002G203700 14.66 0.7471
AT1G21200 Trihelix sequence-specific DNA binding ... Potri.005G191700 14.69 0.6904
AT5G64420 DNA polymerase V family (.1) Potri.001G285600 18.89 0.7406
AT5G15280 Pentatricopeptide repeat (PPR)... Potri.017G086000 18.97 0.7262
AT5G24400 PGL3, EMB2024 6-PHOSPHOGLUCONOLACTONASE 3, E... Potri.012G020100 19.28 0.6318
AT2G31660 EMA1, URM9, SAD... UNARMED 9, SUPER SENSITIVE TO ... Potri.002G232600 20.49 0.7090

Potri.004G128601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.