Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18800 243 / 2e-81 NRP2 NAP1-related protein 2 (.1) AT1G74560 235 / 7e-78 NRP1 NAP1-related protein 1 (.1.2.3) AT2G19480 46 / 1e-05 NFA2, NFA02, NAP1;2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) AT3G13782 45 / 1e-05 NFA4, NFA04, NAP1;4 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 4, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 04, nucleosome assembly protein1;4 (.1) AT4G26110 43 / 8e-05 NAP1;1, ATNAP1;1 ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, nucleosome assembly protein1;1 (.1.2) AT5G56950 40 / 0.001 NFA3, NFA03, NAP1;3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A3, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 03, nucleosome assembly protein 1;3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G080700 [exp] 323 / 8e-113 AT1G18800 292 / 4e-100 NAP1-related protein 2 (.1) Potri.012G069100 [exp] 248 / 9e-83 AT1G18800 325 / 7e-113 NAP1-related protein 2 (.1) Potri.015G062700 [exp] 239 / 2e-79 AT1G18800 324 / 2e-112 NAP1-related protein 2 (.1) Potri.006G148600 [exp] 50 / 4e-07 AT2G19480 447 / 1e-157 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.018G067800 [exp] 47 / 3e-06 AT2G19480 462 / 4e-163 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G040700 [exp] 43 / 9e-05 AT2G19480 287 / 7e-93 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G021400 [exp] 43 / 0.0001 AT2G19480 286 / 2e-94 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G040250 [exp] 43 / 0.0001 AT2G19480 280 / 9e-87 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G036500 [exp] 41 / 0.0004 AT2G19480 280 / 5e-90 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023599 [exp] 266 / 4e-90 AT1G18800 334 / 2e-116 NAP1-related protein 2 (.1) Lus10024229 [exp] 263 / 7e-89 AT1G18800 336 / 4e-117 NAP1-related protein 2 (.1) Lus10008620 [exp] 213 / 7e-70 AT1G18800 272 / 1e-92 NAP1-related protein 2 (.1) Lus10027615 [exp] 44 / 7e-05 AT2G19480 385 / 3e-134 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10011957 [exp] 43 / 9e-05 AT2G19480 449 / 2e-158 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10011956 [exp] 43 / 0.0001 AT2G19480 422 / 8e-148 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00956 [poplar] [flax] NAP Nucleosome assembly protein (NAP)
Representative CDS sequence Show only first row Show all	>Potri.004G128701.1 pacid=42793965 polypeptide=Potri.004G128701.1.p locus=Potri.004G128701 ID=Potri.004G128701.1.v4.1 annot-version=v4.1 ATGGTGGCTGACAAAGGAAAGAAATCAAAGGTCACTGGAGAAGAAGAGACTGATCACATTGACGGAGAACTTGTTCTTTCCGTTGAGAAGTTGCAGGAGC TCCAAGATGAGCTTGAGAAGATTAATGAACAAGCAAGCGATGAAGTCCTGGGAATTGAGCAGAAGTACAACGATGTTCGCAGACCTGTCAACACTAAAAG GACCGATATCATCAAATCTATTCCTGATTTCTGGTTAACTGCAGAGAGTTTCCTGAGTCATCCTGCTCTTTGTGATCTTTTGACCGAGGAGGACCAAAAG ATCTTCAAGTATCTAGATTCTCTAGACATGGAGGATTCCAAAGATGTGATGTCAGGGTATTCTATCACATTCAATTTCAAAGAGAATGCTCATTTTGAAG ATACAAAGCTGAAAAAAACCTTTACATTCTTTGAGGAGGGTACAGCTAAGATAACTAGTACATACATCAAGCGCTGCAAATGGAGTCAATCACGAGAAAA AGGAGACAAACGACCTTTGGCTGAGTTGAGCTTCTTCAGTTGGTTTGCTGAAACTGAACAGGAGGAGATCTCTGAGCTTCATGATGAGGTTGCGGAGATA ATTAAGGAAGACTTGTGGCCCAATCCTCTAAAGTACTTTAACAATGAAGCTGATGAAGAGGATTCTGATGGAAGATGGAGATGGAGATGA
AA sequence Show only first row Show all	>Potri.004G128701.1 pacid=42793965 polypeptide=Potri.004G128701.1.p locus=Potri.004G128701 ID=Potri.004G128701.1.v4.1 annot-version=v4.1 MVADKGKKSKVTGEEETDHIDGELVLSVEKLQELQDELEKINEQASDEVLGIEQKYNDVRRPVNTKRTDIIKSIPDFWLTAESFLSHPALCDLLTEEDQK IFKYLDSLDMEDSKDVMSGYSITFNFKENAHFEDTKLKKTFTFFEEGTAKITSTYIKRCKWSQSREKGDKRPLAELSFFSWFAETEQEEISELHDEVAEI IKEDLWPNPLKYFNNEADEEDSDGRWRWR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G18800		NRP2	NAP1-related protein 2 (.1)		Potri.004G128701 [exp]	0	1
					Potri.001G284801 [exp]	7.74	0.8394
AT2G16370		THY-1	thymidylate synthase 1 (.1)		Potri.005G230400 [exp]	12.24	0.7994
AT3G22470			Pentatricopeptide repeat (PPR)...		Potri.019G062332 [exp]	16.49	0.8136
AT2G16980			Major facilitator superfamily ...		Potri.010G237300 [exp]	19.07	0.7957
AT1G12300			Tetratricopeptide repeat (TPR)...		Potri.019G062266 [exp]	19.18	0.8531
AT1G29370			Kinase-related protein of unkn...		Potri.005G202851 [exp]	22.04	0.8093
					Potri.003G027116 [exp]	28.14	0.8014
AT1G05790			lipase class 3 family protein ...		Potri.002G231501 [exp]	29.06	0.8198
AT5G42220			Ubiquitin-like superfamily pro...		Potri.002G013500 [exp]	34.87	0.8368
AT1G68640	bZIP	PAN	PERIANTHIA, bZIP transcription...		Potri.010G128001 [exp]	38.70	0.7517

Compare expression of checked genes

Potri.004G128701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.