Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29090 562 / 0 PME31, ATPME31 A. THALIANA PECTIN METHYLESTERASE 31, pectin methylesterase 31 (.1) AT5G19730 275 / 1e-90 Pectin lyase-like superfamily protein (.1) AT2G21610 235 / 2e-75 PE11, ATPE11 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) AT2G36700 222 / 2e-70 Pectin lyase-like superfamily protein (.1) AT2G36710 223 / 7e-70 Pectin lyase-like superfamily protein (.1) AT5G47500 216 / 6e-68 PME5 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) AT5G07430 211 / 4e-66 Pectin lyase-like superfamily protein (.1) AT1G05310 212 / 8e-66 Pectin lyase-like superfamily protein (.1) AT5G07420 211 / 9e-66 Pectin lyase-like superfamily protein (.1) AT5G55590 207 / 2e-64 QRT1 QUARTET 1, Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G087300 [exp] 286 / 2e-97 AT3G29090 271 / 1e-91 A. THALIANA PECTIN METHYLESTERASE 31, pectin methylesterase 31 (.1) Potri.018G068400 [exp] 281 / 6e-93 AT5G19730 603 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G015700 [exp] 267 / 1e-87 AT5G19730 472 / 2e-167 Pectin lyase-like superfamily protein (.1) Potri.014G117100 [exp] 246 / 1e-79 AT5G19730 320 / 3e-107 Pectin lyase-like superfamily protein (.1) Potri.004G156300 [exp] 246 / 1e-79 AT2G21610 457 / 3e-162 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Potri.006G120100 [exp] 224 / 2e-70 AT2G36710 449 / 3e-157 Pectin lyase-like superfamily protein (.1) Potri.003G076900 [exp] 218 / 1e-68 AT5G47500 554 / 0.0 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) Potri.012G113433 [exp] 214 / 4e-67 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1) Potri.012G113533 [exp] 214 / 4e-67 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026047 [exp] 599 / 0 AT3G29090 548 / 0.0 A. THALIANA PECTIN METHYLESTERASE 31, pectin methylesterase 31 (.1) Lus10014338 [exp] 598 / 0 AT3G29090 545 / 0.0 A. THALIANA PECTIN METHYLESTERASE 31, pectin methylesterase 31 (.1) Lus10041699 [exp] 572 / 0 AT3G29090 527 / 0.0 A. THALIANA PECTIN METHYLESTERASE 31, pectin methylesterase 31 (.1) Lus10024050 [exp] 286 / 1e-97 AT3G29090 258 / 4e-87 A. THALIANA PECTIN METHYLESTERASE 31, pectin methylesterase 31 (.1) Lus10012942 [exp] 275 / 2e-90 AT5G19730 594 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10043035 [exp] 273 / 3e-90 AT5G19730 555 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011132 [exp] 271 / 8e-89 AT5G19730 575 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10028364 [exp] 264 / 3e-87 AT5G19730 437 / 4e-154 Pectin lyase-like superfamily protein (.1) Lus10041815 [exp] 263 / 4e-86 AT5G19730 446 / 1e-156 Pectin lyase-like superfamily protein (.1) Lus10009997 [exp] 238 / 3e-76 AT5G19730 320 / 1e-107 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF01095 [poplar] [flax] Pectinesterase Pectinesterase
Representative CDS sequence Show only first row Show all	>Potri.004G128820.1 pacid=42795921 polypeptide=Potri.004G128820.1.p locus=Potri.004G128820 ID=Potri.004G128820.1.v4.1 annot-version=v4.1 ATGGCTAGTCGAGTGGTGACGGTGGCACAAGACGGGAGTGGAGACTTTACGACGGTGCAGGAAGCAGTAGATGCGGTGCCACTCTGCAACACGTGTAGAA CTGTGATTCGTGTGCCACCTGGGGTTTACAGGCAGCCCGTGTACGTGCCGAAGACCAAGAATCTCATAACTCTTGCGGGTTTAAGACCTGAAGACACTAT CTTGACTTGGAACAACACTTCTGCCAAAATTGATCATCACCAGGCTTCGAGGGTCATTGGAACTGGGACGTTTGGGTGTGGGACTGTGATAGTGGAAGGA GAGGATTTTATTGCTGAGAATATCACTTTTGAAAACTCTTCTCCTGAGGGTTCAGGCCAAGCTGTGGCAATTAGGGTGACTGCTGATCGGTGCGCATTCT ATAATTGCCGGTTCCTTGGGTGGCAGGATACTCTCTATTTGCATTATGGGAAGCAGTATTTGAAAGATTGCTACATTGAAGGAAGTGTGGACTTTATCTT TGGGAACAGCACTGCTCTCTTGGAACATTGTCATATTCACTGCAAGTCAGCAGGTTTTATAACTGCTCAAAGCAGAAAATCTTCTCAGGAGTCAACTGGT TATGTCTTTTTGAGATGCGTGATTACTGGTAATGGAGGGACTTCATATATGTACCTTGGACGTCCATGGGGACCCTTTGGAAGAGTGGTCTTTGCATACA CATACATGGATCATTGTATCAGACATGTAGGATGGAACAACTGGGGTAAAGCAGAAAATGAGAGAAGTGCTTGCTTTTATGAGTACAGGTGCTTTGGGCC AGGTAGTTGCCCATCAAAACGAGTGACATGGTCAAGAGAACTGATAGATGAAGAGGCAGATCAATTTCTGATGCATTGTTTCATTGACCCGGATCCAGAA AGGCCTTGGCTATGCCAAAGAATGGCCTTGAGCATTCCATACTCCGCATAG
AA sequence Show only first row Show all	>Potri.004G128820.1 pacid=42795921 polypeptide=Potri.004G128820.1.p locus=Potri.004G128820 ID=Potri.004G128820.1.v4.1 annot-version=v4.1 MASRVVTVAQDGSGDFTTVQEAVDAVPLCNTCRTVIRVPPGVYRQPVYVPKTKNLITLAGLRPEDTILTWNNTSAKIDHHQASRVIGTGTFGCGTVIVEG EDFIAENITFENSSPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALLEHCHIHCKSAGFITAQSRKSSQESTG YVFLRCVITGNGGTSYMYLGRPWGPFGRVVFAYTYMDHCIRHVGWNNWGKAENERSACFYEYRCFGPGSCPSKRVTWSRELIDEEADQFLMHCFIDPDPE RPWLCQRMALSIPYSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G29090		PME31, ATPME31	A. THALIANA PECTIN METHYLESTER...		Potri.004G128820 [exp]	0	1
AT2G37590	DOF	AtDof2. 4, ATDO...	DNA binding with one finger 2....		Potri.010G205400 [exp]	15.58	0.8196
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Potri.001G238400 [exp]	20.88	0.8114
AT3G10850		GLY2, GLX2-2	GLYOXALASE 2-2, Metallo-hydrol...		Potri.019G062600 [exp]	22.71	0.7412	Pt-GLX2.1
AT5G06850			C2 calcium/lipid-binding plant...		Potri.016G049300 [exp]	24.18	0.8089
AT5G17980			C2 calcium/lipid-binding plant...		Potri.013G055500 [exp]	25.61	0.8004
AT2G33860	ARF	ARF3, ETT	ETTIN, AUXIN RESPONSE TRANSCRI...		Potri.011G059300 [exp]	26.45	0.7606
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Potri.008G055100 [exp]	31.32	0.7883
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Potri.004G223900 [exp]	32.86	0.8061
AT3G52490			Double Clp-N motif-containing ...		Potri.010G241600 [exp]	38.34	0.7880
AT2G39840		TOPP4	type one serine/threonine prot...		Potri.010G071850 [exp]	38.57	0.7687

Compare expression of checked genes

Potri.004G128820 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.