Plant FIBer expression Database

Potri.004G128961 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G43760 148 / 6e-39 DNAse I-like superfamily protein (.1)
AT1G40390 119 / 2e-29 DNAse I-like superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G128921
[exp]
860 / 0 AT1G43760 148 / 5e-39 DNAse I-like superfamily protein (.1)
Potri.004G128880
[exp]
860 / 0 AT1G43760 148 / 5e-39 DNAse I-like superfamily protein (.1)
Potri.004G128860
[exp]
860 / 0 AT1G43760 148 / 5e-39 DNAse I-like superfamily protein (.1)
Potri.004G128941
[exp]
860 / 0 AT1G43760 148 / 5e-39 DNAse I-like superfamily protein (.1)
Potri.004G128901
[exp]
858 / 0 AT1G43760 149 / 3e-39 DNAse I-like superfamily protein (.1)
Potri.019G047975
[exp]
812 / 0 AT1G43760 157 / 3e-42 DNAse I-like superfamily protein (.1)
Potri.005G151275
[exp]
701 / 0 AT1G43760 268 / 1e-81 DNAse I-like superfamily protein (.1)
Potri.012G063901
[exp]
701 / 0 AT1G43760 266 / 1e-80 DNAse I-like superfamily protein (.1)
Potri.003G047001
[exp]
628 / 0 AT1G43760 265 / 5e-82 DNAse I-like superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016313
[exp]
58 / 4e-09 ND /
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0530 DNase_I-like PF03372 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence
>Potri.004G128961.1 pacid=42794331 polypeptide=Potri.004G128961.1.p locus=Potri.004G128961 ID=Potri.004G128961.1.v4.1 annot-version=v4.1
ATGATTATTGGATGTTGGAATATTAGAGGTTTGAATGATCCTATAAAGCATTCAGAATTGCGTCGGCTCATCCATCAAAAGAGGATAGCTCTTTTTGGTC
TGGTTGAAACTCGAGTTAAAGACAAGAATAAAGATAATGTTACTCAACTTCTTCTGCGTTCTTGGTCCTTCTTGTATAATTATGATTTCTCTTGTCGTGG
GCGTATTTGGGTTTGTTGGAATGCTGATACGGTGAAGGTGGATGTTTTTGGAATGTCAGACCAGGCTATTCATGTTTCTGTCACTATATTAGCTACCAAT
ATCAGTTTCAATACTTCAATTATTTATGGAGACAATAATGCTTCCTTACGTGAGGCATTATGGTCTGATATTGTGAGTCGAAGTGATGGATGGGAGTCAA
CCCCGTGGATTCTTATGGGTGATTTTAACGCTATCCGCAACCAGTCGGACAGGTTAGGAGGGTCTACTACGTGGGCTGGTACTATGGACAGATTGGATAC
ATGTATTCGAGAAGCCAAAGTAGATGATCTTCGGTATTCAGGTATGCATTATACTTGGTCGAACCAATGTCCTGAGAATCTGATTATGCAGAAACTAGAT
AGAGTGCTTGTCAATGAGAAGTGGAATCTGAAATTTCCATTATCGGAAGCGAGATTTTTGCCTTCGGGTATGTCAGACCATTCTCCTATGGTGGTAAAGG
TTATTGGCAATGATCAGAACATAAAGAAACCATTCAGATTCTTCGATATGTGGATGGATCATGACGAGTTCATGCCCTTGGTGAAGAAGGTATGGGATCA
GAATTCGGGGGGTTGTCCAATGTATCAGCTGTGTTGCAAACTAAGAAAGCTAAAGCAGGAATTGAAACTTTTCAATATGGCTCACTTCTCCAACATTTCA
GATAGAGTGAAAGATGCAAAAAACGAAATGGATAAGGCTCAACAGGCTCTGCATACAGCGCATGAGAATCCAATTTTGTGCATGCGAGAAAGGGATGCTG
TTCATAAATACGCTTCTACCGTCAGGGCTGAAGAGAGTTTTTTCAAACAGAAGGCAAGGATACAATGGCTTAGCTTGGGGGATCAGAATACTAGCTACTT
TCACAAATCAGTAAATGGAAGACATAATAGAAATAAGCTTCTATCACTTACAAGGGAGGATGGAGAGGTTGTCGAAGGACACGAGGCAGTCAAAATCAGA
AGTAATTGCATACTTCCATCGTGTGTTAGGAGTTGA
AA sequence
>Potri.004G128961.1 pacid=42794331 polypeptide=Potri.004G128961.1.p locus=Potri.004G128961 ID=Potri.004G128961.1.v4.1 annot-version=v4.1
MIIGCWNIRGLNDPIKHSELRRLIHQKRIALFGLVETRVKDKNKDNVTQLLLRSWSFLYNYDFSCRGRIWVCWNADTVKVDVFGMSDQAIHVSVTILATN
ISFNTSIIYGDNNASLREALWSDIVSRSDGWESTPWILMGDFNAIRNQSDRLGGSTTWAGTMDRLDTCIREAKVDDLRYSGMHYTWSNQCPENLIMQKLD
RVLVNEKWNLKFPLSEARFLPSGMSDHSPMVVKVIGNDQNIKKPFRFFDMWMDHDEFMPLVKKVWDQNSGGCPMYQLCCKLRKLKQELKLFNMAHFSNIS
DRVKDAKNEMDKAQQALHTAHENPILCMRERDAVHKYASTVRAEESFFKQKARIQWLSLGDQNTSYFHKSVNGRHNRNKLLSLTREDGEVVEGHEAVKIR
SNCILPSCVRS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G43760 DNAse I-like superfamily prote... Potri.004G128961
[exp]
0 1
AT1G43760 DNAse I-like superfamily prote... Potri.004G128860
[exp]
1.00 0.7347
AT1G74830 Protein of unknown function, D... Potri.015G068400
[exp]
6.92 0.6500
AT3G59850 Pectin lyase-like superfamily ... Potri.017G005900
[exp]
7.07 0.6660
AT1G43760 DNAse I-like superfamily prote... Potri.017G066550
[exp]
11.22 0.5320
Potri.002G235550
[exp]
13.41 0.5407
AT5G19820 EMB2734 embryo defective 2734, ARM rep... Potri.004G122133
[exp]
13.85 0.5683
AT3G26430 GDSL-like Lipase/Acylhydrolase... Potri.010G047800
[exp]
14.45 0.5301
AT2G26250 KCS10, FDH FIDDLEHEAD, 3-ketoacyl-CoA syn... Potri.006G080400
[exp]
16.70 0.5674
Potri.014G110850
[exp]
17.32 0.5569
Potri.004G152750
[exp]
18.33 0.5164

Potri.004G128961 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.