Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15080 659 / 0 Protein kinase superfamily protein (.1) AT3G01300 624 / 0 Protein kinase superfamily protein (.1) AT3G28690 621 / 0 Protein kinase superfamily protein (.1.2.3) AT1G07570 449 / 3e-156 APK1A Protein kinase superfamily protein (.1.2.3) AT5G01020 442 / 2e-153 Protein kinase superfamily protein (.1) AT2G28930 437 / 1e-151 APK1B protein kinase 1B (.1.2.3) AT5G02290 437 / 1e-151 NAK Protein kinase superfamily protein (.1.2) AT2G02800 427 / 2e-147 Kin2, APK2B protein kinase 2B (.1.2) AT2G39660 415 / 5e-143 BIK1 botrytis-induced kinase1 (.1) AT1G14370 416 / 6e-143 Kin1, PBL2, APK2A PBS1-like 2, kinase 1, protein kinase 2A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G033800 [exp] 717 / 0 AT5G15080 669 / 0.0 Protein kinase superfamily protein (.1) Potri.008G194700 [exp] 710 / 0 AT5G15080 671 / 0.0 Protein kinase superfamily protein (.1) Potri.017G077300 [exp] 694 / 0 AT5G15080 690 / 0.0 Protein kinase superfamily protein (.1) Potri.004G123800 [exp] 689 / 0 AT5G15080 694 / 0.0 Protein kinase superfamily protein (.1) Potri.006G066100 [exp] 496 / 2e-174 AT5G15080 503 / 6e-177 Protein kinase superfamily protein (.1) Potri.018G127300 [exp] 485 / 5e-170 AT3G01300 498 / 5e-175 Protein kinase superfamily protein (.1) Potri.001G240400 [exp] 461 / 9e-161 AT1G07570 590 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.009G031300 [exp] 458 / 1e-159 AT2G28930 603 / 0.0 protein kinase 1B (.1.2.3) Potri.010G203400 [exp] 451 / 1e-156 AT2G28930 540 / 0.0 protein kinase 1B (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030668 [exp] 684 / 0 AT5G15080 723 / 0.0 Protein kinase superfamily protein (.1) Lus10030796 [exp] 677 / 0 AT5G15080 691 / 0.0 Protein kinase superfamily protein (.1) Lus10005255 [exp] 676 / 0 AT5G15080 720 / 0.0 Protein kinase superfamily protein (.1) Lus10038087 [exp] 487 / 2e-170 AT5G15080 499 / 6e-175 Protein kinase superfamily protein (.1) Lus10006643 [exp] 485 / 9e-170 AT5G15080 495 / 2e-173 Protein kinase superfamily protein (.1) Lus10013273 [exp] 478 / 8e-159 AT3G17900 696 / 0.0 unknown protein Lus10024391 [exp] 449 / 2e-156 AT5G02290 563 / 0.0 Protein kinase superfamily protein (.1.2) Lus10010835 [exp] 446 / 4e-155 AT5G02290 561 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023794 [exp] 441 / 1e-153 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10016537 [exp] 440 / 2e-152 AT2G28930 581 / 0.0 protein kinase 1B (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.004G129000.1 pacid=42795301 polypeptide=Potri.004G129000.1.p locus=Potri.004G129000 ID=Potri.004G129000.1.v4.1 annot-version=v4.1 ATGGTGTTAGGTCCTGATTCTATCAATGTGGCTGATTGGACTGTGGGAAAATCAAAGTTAAAGAAGAAGAAAGATGGTGCAGCTGAGGAAAGTGGATGTT GGATTAAGTTTAGGTTCATTGGGAGCTGCATTTCTTCAAGAACAAGGGTTGATAGCTCCATAAGTGGCACTAGCACACAATATGCGGAAAGCAAATCAAC AAATGATACCGGCAGAGACCAACCGGCTGTTCAAGTGGGATCATCCTCGAGCACTAGCAATGTTGAAAGTTCTCCATCTACTCCCAATACTGGTGAGGAA CTTAAAGTTTCCTCTCAGCTTCGAAAATTCTCCTTTAATGAGCTCAAATCAGCAACAAGGAATTTTAGGCCTGAGAGTATTCTTGGCGAGGGAGGGTTTG GTTGCGTATTCAAAGGTTGGATTAATGAGAATGGAACTGCTCCAGTGAAACCTGGCACGGGGCTGTCTGTTGCTGTAAAAACTCTCAACCATGATGGACT TCAGGGACATAAAGAATGGCTTGCTGAAGTTAATTATCTCGGCGACCTTCTCCATCCTAATTTGGTTAAATTAATTGGCTATTGCATTGAGGACGATCAA AGGCTTCTAGTCTATGAGTTTATGCCTCGAGGAAGCTTGGAGAATCACCTCTTTAGAAGATCCCTGCCTCTTCCCTGGTCTGTCAGAATGAAAGTACTGC TTGGCGCTGCAAAGGGCCTTACCTTTCTTCATGAGGAAGCTGAACGGCCAGTGATATATCGAGATTTCAAAACATCTAATATCCTACTAGATGCAGACTA CAACGCCAAGCTTTCTGATTTTGGACTTGCCAAAGATGGTCCAGAAGGGGACAAGACTCATGTATCTACCCGCGTGATGGGAACATATGGTTACGCAGCC CCCGAGTATGTAATGACAGGTCATCTCACATCCAAGAGTGATGTCTATAGCTTTGGGGTTGTTTTACTTGAAATGTTGACTGGTCGAAGATCCATGGACA AACACCGACCAAATGGTGAGCATAATCTGGTGGAATGGGCACAGCCACACCTTGGCGAGAGGAGAAGATTCTACAGAATGATAGACCCTCGTCTTGAAGG ACGCTTCTCCATCAAAGGTGCTCAGAAGGCAATCCAATTGGCTGCACACTGCCTTAACCGTGACCCCAAAGCCAGACCTCTGATGAGTGATGTTGTTGAA GCCCTAAAGCCTCTGCCTTGCCTCAAGGACATGGCCTGTTCTTCATCATACTTTCAAGCCATGCAATCAGAGCGAGGCAGCTCCAATCCAAGCGCTCAGA ATGGAAGTAGAGTGCGGCCAGGGTATTCCAGGAATATGCAACCAACAAAGAGCTTCCCCAAATTCAATGGTCATCATGGTAACAGTTATTACCGGTCACC CGTTCCTAAAGCAGGAGAACCATAG
AA sequence Show only first row Show all	>Potri.004G129000.1 pacid=42795301 polypeptide=Potri.004G129000.1.p locus=Potri.004G129000 ID=Potri.004G129000.1.v4.1 annot-version=v4.1 MVLGPDSINVADWTVGKSKLKKKKDGAAEESGCWIKFRFIGSCISSRTRVDSSISGTSTQYAESKSTNDTGRDQPAVQVGSSSSTSNVESSPSTPNTGEE LKVSSQLRKFSFNELKSATRNFRPESILGEGGFGCVFKGWINENGTAPVKPGTGLSVAVKTLNHDGLQGHKEWLAEVNYLGDLLHPNLVKLIGYCIEDDQ RLLVYEFMPRGSLENHLFRRSLPLPWSVRMKVLLGAAKGLTFLHEEAERPVIYRDFKTSNILLDADYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAA PEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKHRPNGEHNLVEWAQPHLGERRRFYRMIDPRLEGRFSIKGAQKAIQLAAHCLNRDPKARPLMSDVVE ALKPLPCLKDMACSSSYFQAMQSERGSSNPSAQNGSRVRPGYSRNMQPTKSFPKFNGHHGNSYYRSPVPKAGEP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15080			Protein kinase superfamily pro...		Potri.004G129000 [exp]	0	1
AT1G69420			DHHC-type zinc finger family p...		Potri.008G091700 [exp]	1.00	0.9391
AT2G24290			Protein of unknown function (D...		Potri.013G026900 [exp]	1.73	0.9155
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Potri.002G172000 [exp]	2.64	0.9084
AT1G10180			unknown protein		Potri.015G119300 [exp]	2.82	0.9131
AT1G08560		KN, ATSYP111, S...	KNOLLE, syntaxin of plants 11...		Potri.019G030800 [exp]	4.12	0.8982	SYP111.2
AT2G02480		STI	STICHEL, AAA-type ATPase famil...		Potri.003G044900 [exp]	5.74	0.9066	STI.5
AT3G66658		ALDH22A1	aldehyde dehydrogenase 22A1 (....		Potri.008G106000 [exp]	6.32	0.9125	ALDH22.1
AT1G78430		RIP2	ROP interactive partner 2 (.1)		Potri.001G377900 [exp]	6.92	0.9063
AT1G68060		ATMAP70-1	microtubule-associated protein...		Potri.010G106100 [exp]	8.48	0.9070
AT5G55230		ATMAP65-1	microtubule-associated protein...		Potri.011G092500 [exp]	8.83	0.9111

Compare expression of checked genes

Potri.004G129000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.