Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28880 263 / 1e-74 Ankyrin repeat family protein (.1) AT2G33410 62 / 1e-09 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G26650 59 / 8e-09 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G55550 59 / 1e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT4G14300 59 / 1e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G07810 58 / 3e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G13224 56 / 4e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G03430 56 / 5e-08 Ankyrin repeat family protein (.1) AT5G40490 57 / 7e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G58470 54 / 4e-07 XF41, ATRBP1 RNA-binding protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G161300 [exp] 65 / 3e-11 AT2G03430 356 / 1e-125 Ankyrin repeat family protein (.1) Potri.002G115000 [exp] 58 / 2e-08 AT1G58470 219 / 7e-69 RNA-binding protein 1 (.1) Potri.001G361300 [exp] 58 / 3e-08 AT3G07810 433 / 1e-148 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G258600 [exp] 57 / 3e-08 AT4G14300 277 / 1e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G067500 [exp] 57 / 3e-08 AT4G14300 302 / 7e-99 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.007G044400 [exp] 57 / 3e-08 AT4G36960 534 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.008G170400 [exp] 57 / 4e-08 AT4G14300 317 / 2e-104 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G022100 [exp] 56 / 6e-08 AT2G46780 161 / 1e-47 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G012700 [exp] 56 / 2e-07 AT1G58470 180 / 2e-51 RNA-binding protein 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005246 [exp] 735 / 0 AT3G28880 275 / 4e-79 Ankyrin repeat family protein (.1) Lus10019276 [exp] 62 / 9e-10 AT4G14300 149 / 1e-41 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10043124 [exp] 62 / 1e-09 AT2G33410 334 / 2e-111 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10032624 [exp] 62 / 2e-09 AT2G33410 335 / 2e-112 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10009360 [exp] 61 / 3e-09 AT4G36960 529 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10014562 [exp] 60 / 6e-09 AT5G40490 301 / 9e-99 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10011560 [exp] 60 / 6e-09 AT4G14300 94 / 5e-28 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10032124 [exp] 60 / 7e-09 AT5G40490 307 / 3e-101 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10011783 [exp] 60 / 7e-09 AT4G14300 290 / 1e-94 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10022889 [exp] 59 / 1e-08 AT4G14300 315 / 9e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies) CL0123 [poplar] [flax] HTH PF12872 [poplar] [flax] OST-HTH OST-HTH/LOTUS domain CL0465 [poplar] [flax] Ank PF13857 [poplar] [flax] Ank_5 Ankyrin repeats (many copies)
Representative CDS sequence Show only first row Show all	>Potri.004G129100.6 pacid=42795162 polypeptide=Potri.004G129100.6.p locus=Potri.004G129100 ID=Potri.004G129100.6.v4.1 annot-version=v4.1 ATGGATCTGGAAATACAAAGATTCTCGCTCACAGACCTCTCAAAGCAAACAAAAACTGCAGCTTCAAGTAAAGATCATGAGTTCCCTAACGCAGAGGTTT TGGAAACAAGCGTGATAAAATCAGTCTTAGAAGACAACAAACTACAGTTACTCTCTCTCTCAAAAAAAGTTGTTACAGAACGTACAATAATCACCAAGCT GCTCCATCTCTGCTGCACCTTCGATTCTGTTGACTGCGCCACATCACTACTCAACGGCGAGTTCGGATCGGTGCCGGTGATAAATGAACCGGACTCAACC GGTCTCTCGCCGCTGCACGCCGCTGCAACTGCTAACGCGGCGCGTTGTGTGGAAATGCTTCTGGAAAAACACGCTCGTACGGATTTGGAGAGCAGAGATG GACGCAGACTGTTACCTCTGGAGCTGTCCTTGTGTAACACCAGAAAGGATCTGATTTGGGATCTGGATGACAATTCAACCATTGAAGACTTGGTTGTTCA AATTAGTGAAAAGGATTTAACTACACTAAAACTTCTTGCTGACAAAACGGAGGAAATCGGTGACGTGGCATACAGAATGGCGGAAGCAGGGCGTGTGGTT GATTTAGCTGCTCTTCTGGTAGTGGCAGCAGATAAAATAAATGAATCGATTTTACCGGTGCGTGATGCTGTTTTGGATTGTAAAGAGAAGACCACAATTT ACGAGGCTGTGATTAGAGAGGCATTGGCACTTGGCGGCCCTACGCCGTCGTTGAGGGCAGCAAAAAGGGTAACAGTTCTAAGCGAGAGTGAGCGTGCTGA GAAAAGGAAACTCTTGCTCTATGAGATTGAGTTGCTTCAGCTCTTTGGTGCTGTTGGTCTCGGATGTTGTACGGACAGGAAGTTACCGTCACCGTTAATC CATGCTGCACAGGCTGGAGATGAAACCATTATTGAGTTGCTTCTGAAGACTAACATAGACTTAAATGATGTCGATCCTGACGGACACTCTGCTCTTCATT GGTGTCTCAAGGCATATAAGCAATCATGTCCTCAGCAGATGAAGATCATGTGGCTTCTACTGAAGCATGGTGCTCGAGTGAACCAGAAAAATAAGCTGGG CTTGACAGCTGTTCATATTGCTGCTTCAAATGGTAATTCACAGGCACTCCAGACTGTACTGCAGGCCCTTCTATTGGAAGACCCAGATTGTATCAACTCT AATACAGAAATGGAAGAAACCCCATTATTTTTTGCTGTGAAGAATGGCTATAAGGACTGTGTTGAAGTTCTATTACACTGGGGAGCAAGCACTGGAGTCT TTAATTTGCGTAAACAGAGACCTGTAGACTTGGCTGAGTCACAAGACATGCGTTTCATGCTAAACAATGCTGATGTTAACCTCACAGTAAATCGTCCCAT TCAGCAGAAATATACAGCATGGTTACAAGGAGGTGATGTAATTCAAGGGACCTGCAAAGAACTCTTTACCTTGACAGATGAAAGGAATCCTACTAATAGG ACTTGCTCGAGTACAAACAAAGAGATCTGTAAATACTTCCATTCTCCTCGTGGATGTGTTAGAGGCACCAAGTGTTTCTATGCACATTCTGAAGAAGAGC GACAGCAGGTGAAGCAGGGAAAATACATGATTCATTCACCTGCTGCAGGGCAACTAGAACGGAAAATTTTTGTTGGAGGCCTCCCAGCTTCTGTAGATTC TGACTCTCTAAGAAAAATTCTTGAAGAGAAATTTGGTTCGGTGGACAATGCTGCAGTACTTGGAGTTCAAACAGCAGATAAGATGCAGTCTCGTGGATTT GGCTTCGTCACCTTCAAAGATAAGAAATCTGTTTCTGCAGCTGTTGAGGCACACCATGTTATTATTATGGGTAAGCAGGTTGAGATCAAAAGTGCTGTTC CAAAATTCCTTCTACTAGCTGAGTTCCAGAAATCAACCCAACAACGTGAAAGAAATCAGATTGACGAGAAACTTCCACAAGCACAAACGCCCAAAGAGAA AACTGAGACGGAAAAGGCCAAAACTGACGTGCTTAATAGGCAGACATCAAGTGAGAAGACAGAAAAAGTGATCCTTAGTTGTAATTCCACAGAAGAGATA AAATCTGAGCCAAGGACTTGGGCTGATACTTTAATCCATGGTCAAACAAAAGCATGTTCTAGTGAATCTCAAACACATGAAAGATGTATGCCTAAGTGGT TCAGAACATTAAGAAGGTGGCTCCCTAGCTTCTTGCAACAAGCATCAAAGAGGGGAGGACAATATGCTCTATCGTCGGTGAAAGCTGATTTCAGGGCCCT TTTTGGCCTAGAATTAGACCATGCCTCTCTCGGTTTCTCAAAGCTTAGTGACTTCATGAAATCTATCCCTGAGCTTTGTCACGTTACGTATCACACTCCA GCCAATCATATGATACTTCTGCCTAGCCTTCCCATTCCTTGTCAGCAGCCACTTCAAGATGTTACGATTGACAGTCCATCTTCACATTCTACATCAATTG GTGATAGCGGTAATGGAAATTCTGATGGTTCCATTTGCTCTCAGGAACCTCTTCTTGTGTCCATTGAGAATGATGACTTAAATGATAGCAGCAGCACTAG GGTGTCCTTTCAGATCACTGATGATAATCCTGCAGATAAATTGCCCTGTGTGAACTCGAGGTTTCTTCAATTCTTGAAACCAGACCCAATCTTTCATGCT CGACCGTGGGTAAATAGTGACTCTGATGGAGGCAAAGAGAGTACTGTTGGTGAAAGAGGATCAGGAAATGGGTTTCAAGAGATGAAGCCCTGGCCTCAAG GAAGGCATTTGGTTTTAGAGGCCCTTGCCAGAAAAAAGAATAGCTCATCTGTTTACTTTCTTCGTGAATTTGATTTCTATGATGAATACAAGGCAAGCAT CGCACAAGGAAGGTGCCTGGGGTGCAACGAGCGTCGGATGTTGTGGGCCAACTTCCCATGCTTGCACTTGGTGTGGTGTGCTGATTGTAAACTACAAGCC ATGATGGCAGCTCGCCTTGGTGAACACAAATGTGTGGTGTGTGATATCAAAGTGCAGGCAATAGATTTGATATCTTGGCATGAATACTGTCAGCCCATTC TTGACACAGCTTGCATCAAGGAGTTCCCCCCATTTGATCCTGGTTACATGCTAAAGAAGAAGCCTATATTTGAATAG
AA sequence Show only first row Show all	>Potri.004G129100.6 pacid=42795162 polypeptide=Potri.004G129100.6.p locus=Potri.004G129100 ID=Potri.004G129100.6.v4.1 annot-version=v4.1 MDLEIQRFSLTDLSKQTKTAASSKDHEFPNAEVLETSVIKSVLEDNKLQLLSLSKKVVTERTIITKLLHLCCTFDSVDCATSLLNGEFGSVPVINEPDST GLSPLHAAATANAARCVEMLLEKHARTDLESRDGRRLLPLELSLCNTRKDLIWDLDDNSTIEDLVVQISEKDLTTLKLLADKTEEIGDVAYRMAEAGRVV DLAALLVVAADKINESILPVRDAVLDCKEKTTIYEAVIREALALGGPTPSLRAAKRVTVLSESERAEKRKLLLYEIELLQLFGAVGLGCCTDRKLPSPLI HAAQAGDETIIELLLKTNIDLNDVDPDGHSALHWCLKAYKQSCPQQMKIMWLLLKHGARVNQKNKLGLTAVHIAASNGNSQALQTVLQALLLEDPDCINS NTEMEETPLFFAVKNGYKDCVEVLLHWGASTGVFNLRKQRPVDLAESQDMRFMLNNADVNLTVNRPIQQKYTAWLQGGDVIQGTCKELFTLTDERNPTNR TCSSTNKEICKYFHSPRGCVRGTKCFYAHSEEERQQVKQGKYMIHSPAAGQLERKIFVGGLPASVDSDSLRKILEEKFGSVDNAAVLGVQTADKMQSRGF GFVTFKDKKSVSAAVEAHHVIIMGKQVEIKSAVPKFLLLAEFQKSTQQRERNQIDEKLPQAQTPKEKTETEKAKTDVLNRQTSSEKTEKVILSCNSTEEI KSEPRTWADTLIHGQTKACSSESQTHERCMPKWFRTLRRWLPSFLQQASKRGGQYALSSVKADFRALFGLELDHASLGFSKLSDFMKSIPELCHVTYHTP ANHMILLPSLPIPCQQPLQDVTIDSPSSHSTSIGDSGNGNSDGSICSQEPLLVSIENDDLNDSSSTRVSFQITDDNPADKLPCVNSRFLQFLKPDPIFHA RPWVNSDSDGGKESTVGERGSGNGFQEMKPWPQGRHLVLEALARKKNSSSVYFLREFDFYDEYKASIAQGRCLGCNERRMLWANFPCLHLVWCADCKLQA MMAARLGEHKCVVCDIKVQAIDLISWHEYCQPILDTACIKEFPPFDPGYMLKKKPIFE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G28880			Ankyrin repeat family protein ...		Potri.004G129100 [exp]	0	1
AT5G03340			ATPase, AAA-type, CDC48 protei...		Potri.017G108200 [exp]	2.64	0.8578
AT2G04410			RPM1-interacting protein 4 (RI...		Potri.012G092601 [exp]	2.82	0.8893
AT5G18820		Cpn60alpha2, EM...	embryo defective 3007, chapero...		Potri.015G123600 [exp]	3.16	0.8853
AT3G19090			RNA-binding protein (.1)		Potri.009G106500 [exp]	10.67	0.8736
AT3G48950			Pectin lyase-like superfamily ...		Potri.004G073900 [exp]	20.24	0.8526
AT4G08850			Leucine-rich repeat receptor-l...		Potri.012G124200 [exp]	21.49	0.8043
AT5G05970		NEDD1	NEURAL PRECURSOR CELL EXPRESSE...		Potri.010G197700 [exp]	27.60	0.8593
AT3G57880			Calcium-dependent lipid-bindin...		Potri.011G052000 [exp]	27.71	0.8272
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Potri.005G139700 [exp]	30.44	0.8547
AT3G48860			unknown protein		Potri.001G065800 [exp]	34.27	0.8599

Compare expression of checked genes

Potri.004G129100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.