Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39830 595 / 0 DEG8, DEGP8 DEG PROTEASE 8, Trypsin family protein with PDZ domain (.1.2) AT3G27925 271 / 5e-86 DEGP, DegP1, DEG1 DegP protease 1 (.1) AT4G18370 179 / 3e-52 DEGP5, DEG5, HHOA PROTEASE HHOA PRECUSOR, DEGP protease 5 (.1) AT5G27660 100 / 1e-22 Trypsin family protein with PDZ domain (.1) AT2G47940 56 / 4e-08 EMB3117, DEGP2 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) AT1G65640 52 / 5e-07 DEGP4 DegP protease 4 (.1) AT1G65630 49 / 6e-06 DEGP3 DegP protease 3 (.1) AT5G40560 49 / 7e-06 DEGP13 DegP protease 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G348800 [exp] 281 / 4e-90 AT3G27925 595 / 0.0 DegP protease 1 (.1) Potri.011G083300 [exp] 171 / 2e-49 AT4G18370 355 / 4e-123 PROTEASE HHOA PRECUSOR, DEGP protease 5 (.1) Potri.013G018300 [exp] 107 / 6e-25 AT5G27660 516 / 0.0 Trypsin family protein with PDZ domain (.1) Potri.014G135200 [exp] 54 / 2e-07 AT2G47940 932 / 0.0 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) Potri.018G001100 [exp] 51 / 4e-07 AT3G27925 50 / 4e-07 DegP protease 1 (.1) Potri.002G207200 [exp] 50 / 2e-06 AT2G47940 931 / 0.0 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) Potri.008G079900 [exp] 44 / 0.0003 AT5G36950 857 / 0.0 DegP protease 10 (.1) Potri.012G077900 [exp] 42 / 0.0006 AT5G40200 845 / 0.0 DegP protease 9 (.1) Potri.015G073100 [exp] 42 / 0.001 AT5G40200 842 / 0.0 DegP protease 9 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007262 [exp] 582 / 0 AT5G39830 597 / 0.0 DEG PROTEASE 8, Trypsin family protein with PDZ domain (.1.2) Lus10008781 [exp] 287 / 5e-92 AT3G27925 641 / 0.0 DegP protease 1 (.1) Lus10022234 [exp] 269 / 2e-84 AT3G27925 623 / 0.0 DegP protease 1 (.1) Lus10042822 [exp] 173 / 1e-49 AT4G18370 329 / 3e-112 PROTEASE HHOA PRECUSOR, DEGP protease 5 (.1) Lus10028120 [exp] 152 / 1e-41 AT4G18370 284 / 4e-94 PROTEASE HHOA PRECUSOR, DEGP protease 5 (.1) Lus10037815 [exp] 102 / 4e-23 AT5G27660 491 / 9e-173 Trypsin family protein with PDZ domain (.1) Lus10017093 [exp] 73 / 1e-13 AT5G27660 393 / 9e-135 Trypsin family protein with PDZ domain (.1) Lus10005931 [exp] 50 / 2e-06 AT2G47940 452 / 8e-155 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) Lus10014524 [exp] 44 / 0.0002 AT5G40200 843 / 0.0 DegP protease 9 (.1) Lus10032163 [exp] 44 / 0.0002 AT5G40200 843 / 0.0 DegP protease 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0124 [poplar] [flax] Peptidase_PA PF00089 [poplar] [flax] Trypsin Trypsin CL0466 [poplar] [flax] PDZ-like PF13180 [poplar] [flax] PDZ_2 PDZ domain
Representative CDS sequence Show only first row Show all	>Potri.004G129200.1 pacid=42796115 polypeptide=Potri.004G129200.1.p locus=Potri.004G129200 ID=Potri.004G129200.1.v4.1 annot-version=v4.1 ATGTTGTTAGCATGCAATCGTTGTTGGTCACTACGAAAAAACTGTTGTGGAATAATCATTAACAACATTAATGATGTCCCAAGACACGACAACTACTCTT TGTTTTTGGGTCGCCGGAAGCTCTTGTCCTCCTCCATCTCTTTATCCTCTGATGACGACGTTGTTTCTTCCTACCCCATCTCCATTTCCAGGAGGAGTGT AACCTCTGGAACCAAAAATTTGCTTCAAGTAATATGCAAATGTAGTCCTACTGCAACAAGGAGGATGTTGCTAGCTAGTTTTTTCTTGTTTCTGGGTTAT CATCCTCCTTCAAGGTACTTATCAGCCCAAGCATTAGGAGATCCATCTGTGACAATTGAACAAGTAACTCCTCCTGTTTTAACTTCGGGTGCACTCTTCC CTGTCGAGGAAAGAATTGTCCAACTGTTTGAAAAGAACACTTACTCTGTTGTCAACATTTTTGACGTAACATTGCGCCCACAACTAAATGTAACTGGGAT GGTTGAGATACCTGAAGGGAATGGTTCTGGGGTGGTCTGGGATGAACAGGGACACATTGTGACGAATTATCATGTGATAGGAAATGCCCTTTCAAGAAAT CCAAGCCCTGGGCAAGTTGTTGCACGAGTTAATATTCTTGCATCAGAAGGGTTACAAAAGAACTTTGAGGGTAAGTTGGTTGGTGCTGACCGGGCAAAGG ACCTTGCTGTCTTGAAGGTAGAAGCATCTGAAGATCTGTTAAAGCCAATTAAGGTGGGGCAATCTTCCTCTCTGAGAGTTGGCCAGCAGTGTCTAGCAAT TGGAAATCCATTTGGCTTTGATCACACTCTCACTGTTGGGGTTATTAGTGGACTGAATCGAGACATTTCCAGTCAAACTGGAGTTACAATTGGTGGTGGA ATTCAAACAGATGCAGCCATCAATCCTGGGAATAGCGGAGGTCCACTGTTGGATTCTAAAGGAAATCTAATTGGCATTAATACAGCAATATTTACTCGGA CAGGGACCTCAGCTGGTGTAGGGTTTGCCATCCCATCTTCAACAGTGCTCAAGATTGCACTGCAGTTAATCCAATTTAGTAAAGTTGTTCGAGCTGGTTT GAATGTTGATATTGCTCCTGATCTAATAGCAAATCAACTTAATGTTCGAAATGGAGCTCTTATCTTGCAGGTTCCTGGAAATAGTCTTGCAGCTAAGGCT GGATTGGTACCTACCACAAGAGGTTTTGCTGGAAACATTGTACTTGGGGACGTTATTGTTGGTGTGGACAACAAAACTGTTAAAAACAAAGCAGGATTAG ACAAAGTGCTGGATGATTATAATGTGGGAGATAGAGTACTGTTGATAATTCAAAGGGGCAGTGAGGATCTTGAGGTGCCTATAATTCTAGAGGAGAAGAG TTAA
AA sequence Show only first row Show all	>Potri.004G129200.1 pacid=42796115 polypeptide=Potri.004G129200.1.p locus=Potri.004G129200 ID=Potri.004G129200.1.v4.1 annot-version=v4.1 MLLACNRCWSLRKNCCGIIINNINDVPRHDNYSLFLGRRKLLSSSISLSSDDDVVSSYPISISRRSVTSGTKNLLQVICKCSPTATRRMLLASFFLFLGY HPPSRYLSAQALGDPSVTIEQVTPPVLTSGALFPVEERIVQLFEKNTYSVVNIFDVTLRPQLNVTGMVEIPEGNGSGVVWDEQGHIVTNYHVIGNALSRN PSPGQVVARVNILASEGLQKNFEGKLVGADRAKDLAVLKVEASEDLLKPIKVGQSSSLRVGQQCLAIGNPFGFDHTLTVGVISGLNRDISSQTGVTIGGG IQTDAAINPGNSGGPLLDSKGNLIGINTAIFTRTGTSAGVGFAIPSSTVLKIALQLIQFSKVVRAGLNVDIAPDLIANQLNVRNGALILQVPGNSLAAKA GLVPTTRGFAGNIVLGDVIVGVDNKTVKNKAGLDKVLDDYNVGDRVLLIIQRGSEDLEVPIILEEKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G39830		DEG8, DEGP8	DEG PROTEASE 8, Trypsin family...		Potri.004G129200 [exp]	0	1
AT3G24430		HCF101	HIGH-CHLOROPHYLL-FLUORESCENCE ...		Potri.018G076600 [exp]	2.82	0.9748	Pt-HCF101.1
AT3G53130		CYP97C1, LUT1	LUTEIN DEFICIENT 1, CYTOCHROME...		Potri.006G119800 [exp]	3.46	0.9727	CYP97C4
AT1G29880			glycyl-tRNA synthetase / glyci...		Potri.001G067800 [exp]	5.29	0.9580	Pt-GLYRS.1
AT3G02690			nodulin MtN21 /EamA-like trans...		Potri.012G145300 [exp]	6.70	0.9661
AT1G13270		MAP1B, MAP1C	methionine aminopeptidase 1B (...		Potri.008G117200 [exp]	6.92	0.9730
AT5G08650			Small GTP-binding protein (.1)		Potri.001G305300 [exp]	9.16	0.9677
AT3G07670			Rubisco methyltransferase fami...		Potri.014G169300 [exp]	10.00	0.9696
AT1G12800			Nucleic acid-binding, OB-fold-...		Potri.003G124200 [exp]	11.61	0.9627
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Potri.005G000500 [exp]	12.44	0.9686
AT5G15450		AtCLPB3, APG6, ...	CASEIN LYTIC PROTEINASE B-P, A...		Potri.004G124800 [exp]	13.11	0.9429

Compare expression of checked genes

Potri.004G129200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.