Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47800 414 / 5e-145 Galactose mutarotase-like superfamily protein (.1) AT5G15140 412 / 3e-142 Galactose mutarotase-like superfamily protein (.1) AT3G17940 316 / 1e-106 Galactose mutarotase-like superfamily protein (.1) AT3G01260 287 / 5e-94 Galactose mutarotase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G080200 [exp] 561 / 0 AT3G47800 406 / 9e-142 Galactose mutarotase-like superfamily protein (.1) Potri.017G080100 [exp] 544 / 0 AT3G47800 397 / 3e-138 Galactose mutarotase-like superfamily protein (.1) Potri.017G080000 [exp] 471 / 3e-167 AT5G15140 432 / 3e-150 Galactose mutarotase-like superfamily protein (.1) Potri.012G128800 [exp] 441 / 1e-155 AT3G47800 459 / 1e-162 Galactose mutarotase-like superfamily protein (.1) Potri.012G045875 [exp] 352 / 8e-121 AT3G17940 555 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.017G129300 [exp] 336 / 4e-114 AT3G17940 496 / 1e-177 Galactose mutarotase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007251 [exp] 472 / 2e-167 AT5G15140 404 / 7e-139 Galactose mutarotase-like superfamily protein (.1) Lus10015365 [exp] 471 / 1e-166 AT5G15140 403 / 7e-138 Galactose mutarotase-like superfamily protein (.1) Lus10005251 [exp] 431 / 4e-152 AT5G15140 370 / 2e-126 Galactose mutarotase-like superfamily protein (.1) Lus10030673 [exp] 418 / 3e-144 AT5G15140 358 / 1e-118 Galactose mutarotase-like superfamily protein (.1) Lus10023611 [exp] 399 / 8e-139 AT3G47800 462 / 5e-164 Galactose mutarotase-like superfamily protein (.1) Lus10010976 [exp] 327 / 2e-110 AT3G17940 497 / 4e-178 Galactose mutarotase-like superfamily protein (.1) Lus10000452 [exp] 290 / 8e-97 AT3G17940 436 / 1e-154 Galactose mutarotase-like superfamily protein (.1) Lus10026181 [exp] 291 / 9e-97 AT3G17940 500 / 3e-179 Galactose mutarotase-like superfamily protein (.1) Lus10024242 [exp] 140 / 2e-40 AT3G47800 155 / 3e-46 Galactose mutarotase-like superfamily protein (.1) Lus10042485 [exp] 69 / 2e-14 AT3G17940 113 / 2e-31 Galactose mutarotase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [poplar] [flax] Gal_mutarotase PF01263 [poplar] [flax] Aldose_epim Aldose 1-epimerase
Representative CDS sequence Show only first row Show all	>Potri.004G129700.2 pacid=42796402 polypeptide=Potri.004G129700.2.p locus=Potri.004G129700 ID=Potri.004G129700.2.v4.1 annot-version=v4.1 ATGGCCAAGTTTTGTGTGTTGTTGTGTTTTAGCCTGCTGCTGATTTTCGGGTTTCCAGCTATTGGCTCTGCAACAAAGGAAGAGATTGGGATGTATGAGC TCAAGAAAGGAAATTTCTCTGTGAAACTTACCAATTATGGCGCACATATTATCTCCCTTCTTCTCCCTGATAAATACGGAAAGGTAGCTGATATTGTCCT TGGCTATGATACTATCAAGGAATACAAGAATGATTCATCAAACTTTGGAGCCACTGTGGGACGAGTTGCCAATAGAATTGCTGGTGCTCAATTTACTTTG AATGGAACTCTATATAAACTAGTTGCTAATGAAGGGAAGAACATGCTTCATGGCGGCCGTAAAGGATTTAGTACGGTTGTTTGGAAAGTGAAAAAGTACA GCCCTGAAGGACGTACCCCTTGCATTGTCTTTGCCTATCACAGCTTTGATGGTGAAGAAGGATTCCCCGGTGATCTCCATGTAATTGTGGGATACAAGCT CCTTGGAGACAACAAATTGCGTATAACAATGAAAGCAAAAGCTCTAAACAAGGCCACTCCGGTTAATCTAGTTAACCATGCCTATTGGAACCTTGGTGGA CACAATAGTGGTGATATCTTGTCAGAGGAAATTCAGATCTTCGCTTCGCACTACACTCCTGTTGACAGCCAACTCATTCCTACAGGAGAGATTGTGACAG TGAAAGGAACACCCTATGATTTTCTCAAACCCAACACCATCGGAAGCAAGATCAACAAACTCACTAATGGCTATGACATCAACTATGCACTTGATGGAAG TGGAAACGACAAGTTGAAGAAAGTAGCAATTGTGCGTGATAAGAAGTCTGGAAGAATGATGGAGATATTAACAAATCAACCAGGTGTGCAGTTCTACACA AGCAACACTTTGTACCAGAAGGGAAAAGGTGGATTCGTGTATGAACCTTATGCAGCTCTTTGTCTAGAGACTCAAGGATTTCCTGATTCAGTAAATCACC CCAACTTCCCTTCACAGATTGTGAATCCAGGGACGTACTATAAGCATCAGATGTTGATCAAGTTTTCGAATTTCTAG
AA sequence Show only first row Show all	>Potri.004G129700.2 pacid=42796402 polypeptide=Potri.004G129700.2.p locus=Potri.004G129700 ID=Potri.004G129700.2.v4.1 annot-version=v4.1 MAKFCVLLCFSLLLIFGFPAIGSATKEEIGMYELKKGNFSVKLTNYGAHIISLLLPDKYGKVADIVLGYDTIKEYKNDSSNFGATVGRVANRIAGAQFTL NGTLYKLVANEGKNMLHGGRKGFSTVVWKVKKYSPEGRTPCIVFAYHSFDGEEGFPGDLHVIVGYKLLGDNKLRITMKAKALNKATPVNLVNHAYWNLGG HNSGDILSEEIQIFASHYTPVDSQLIPTGEIVTVKGTPYDFLKPNTIGSKINKLTNGYDINYALDGSGNDKLKKVAIVRDKKSGRMMEILTNQPGVQFYT SNTLYQKGKGGFVYEPYAALCLETQGFPDSVNHPNFPSQIVNPGTYYKHQMLIKFSNF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47800			Galactose mutarotase-like supe...		Potri.004G129700 [exp]	0	1
AT2G41540		GPDHC1	6-phosphogluconate dehydrogena...		Potri.006G046900 [exp]	2.44	0.8797
AT5G08350			GRAM domain-containing protein...		Potri.005G088200 [exp]	3.00	0.8637
AT3G14260			Protein of unknown function (D...		Potri.003G072200 [exp]	3.87	0.8551
AT1G77020			DNAJ heat shock N-terminal dom...		Potri.002G074600 [exp]	6.48	0.8523
AT1G65910	NAC	ANAC028	NAC domain containing protein ...		Potri.004G081000 [exp]	7.48	0.8753
AT1G48960			Adenine nucleotide alpha hydro...		Potri.012G059100 [exp]	10.19	0.8299
AT5G51460		ATTPPA	Haloacid dehalogenase-like hyd...		Potri.015G126900 [exp]	12.48	0.8134	Pt-ATTPPA.2
AT5G04890		RTM2	RESTRICTED TEV MOVEMENT 2, HSP...		Potri.008G013800 [exp]	14.96	0.8583
AT5G11320		YUC4	YUCCA4, Flavin-binding monooxy...		Potri.006G248200 [exp]	15.16	0.8319	Pt-YUC.2
AT3G22104			Phototropic-responsive NPH3 fa...		Potri.004G030600 [exp]	16.24	0.8302

Compare expression of checked genes

Potri.004G129700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.