Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PDH.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34590 634 / 0 Transketolase family protein (.1) AT1G30120 629 / 0 PDH-E1 BETA, PDH-E1BETA pyruvate dehydrogenase E1 beta (.1) AT5G50850 251 / 4e-80 MAB1 MACCI-BOU, Transketolase family protein (.1) AT1G55510 190 / 9e-57 BCDH BETA1, BCDHBETA1 branched-chain alpha-keto acid decarboxylase E1 beta subunit (.1) AT3G13450 189 / 2e-56 DIN4 DARK INDUCIBLE 4, Transketolase family protein (.1) AT3G21500 46 / 4e-05 DXPS1 1-deoxy-D-xylulose 5-phosphate synthase 1 (.1.2) AT4G15560 45 / 9e-05 AtCLA1, DXS, DXPS2, DEF, CLA1 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G076500 [exp] 682 / 0 AT2G34590 671 / 0.0 Transketolase family protein (.1) Potri.003G166400 [exp] 252 / 3e-80 AT5G50850 636 / 0.0 MACCI-BOU, Transketolase family protein (.1) Potri.001G061400 [exp] 249 / 2e-79 AT5G50850 640 / 0.0 MACCI-BOU, Transketolase family protein (.1) Potri.003G222800 [exp] 187 / 2e-55 AT1G55510 632 / 0.0 branched-chain alpha-keto acid decarboxylase E1 beta subunit (.1) Potri.006G171700 [exp] 44 / 0.0001 AT4G15560 1037 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Potri.008G196500 [exp] 42 / 0.0007 AT4G15560 1207 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038505 [exp] 632 / 0 AT2G34590 693 / 0.0 Transketolase family protein (.1) Lus10023304 [exp] 628 / 0 AT2G34590 687 / 0.0 Transketolase family protein (.1) Lus10032550 [exp] 253 / 4e-81 AT5G50850 613 / 0.0 MACCI-BOU, Transketolase family protein (.1) Lus10032549 [exp] 254 / 1e-79 AT5G50850 628 / 0.0 MACCI-BOU, Transketolase family protein (.1) Lus10043191 [exp] 257 / 5e-77 AT5G50850 635 / 0.0 MACCI-BOU, Transketolase family protein (.1) Lus10013401 [exp] 188 / 5e-55 AT1G55510 622 / 0.0 branched-chain alpha-keto acid decarboxylase E1 beta subunit (.1) Lus10010324 [exp] 186 / 5e-55 AT1G55510 619 / 0.0 branched-chain alpha-keto acid decarboxylase E1 beta subunit (.1) Lus10039361 [exp] 54 / 7e-09 AT5G50850 135 / 9e-40 MACCI-BOU, Transketolase family protein (.1) Lus10015519 [exp] 43 / 0.0004 AT4G15560 578 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10001322 [exp] 43 / 0.0006 AT4G15560 1021 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [poplar] [flax] THDP-binding PF02779 [poplar] [flax] Transket_pyr Transketolase, pyrimidine binding domain CL0591 [poplar] [flax] TKC_like PF02780 [poplar] [flax] Transketolase_C Transketolase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.004G129800.1 pacid=42795952 polypeptide=Potri.004G129800.1.p locus=Potri.004G129800 ID=Potri.004G129800.1.v4.1 annot-version=v4.1 ATGGCCACCATTTTCCAGGCATTAGGAGGAGCTGCTGCTGCAGCAGCAGCTTCTTTAACCAACTCCTTTGATTCAAAGAAATTACTTTTGCCTTCCTCGC GCAGATCCCTCGCAGAGAGAAAAGCTAGCAGCTTTTTGGTGGTGAGATCTGATGGCAGTTTGAATCTGAATCTTGGGAGTTCTAATGGTAGAGCTCGTAC GGTTGATAAATTGATTACAAATGCAGTTGCAACAAAGGCTGATACTTCTGCAGCTTCCTCTGCATCGAAACCTGGGCATGAACTACTACTTTTTGAGGCC CTTAGAGAAGGTTTGGAAGAGGAAATGGACAGAGATCTGCATGTCTGTGTCATGGGTGAAGACGTGGGTCATTATGGAGGTTCTTACAAGGTTACTAAAG GCCTAGCTGAGAAGTATGGGGATCTCAGAGTTCTTGACACCCCTATTGCTGAGAACTCCTTCACTGGTATGGGCATTGGAGCTGCCATGACTGGCTTGAG GCCAATTATTGAGGGTATGAACATGGGATTTCTTCTTCTAGCCTTCAACCAGATCTCAAACAATTGTGGCATGCTCCACTATACATCAGGTGGCCAGTTT ACTATACCAGTTGTCATTCGTGGGCCTGGGGGAGTTGGACGACAACTTGGAGCCGAGCATTCACAACGCCTCGAGTCATATTTTCAATCAATCCCTGGAA TCCAAATGGTTGCATGTTCAACCCCTTACAATGCCAAGGGCTTGATGAAAGCTGCAATCCGAAGTGAGAACCCGGTCATACTTTTTGAGCATGTCTTGCT TTACAACCTCAAGGAGAGAATCCCAGATGAAGAATACATTTGCAATCTTGAGGAAGCTGAGATGGTTAGGCCTGGAGAGCATGTCACTATCTTAACCTAT TCCCGGATGAGATATCATGTGATGCAGGCCGCCAAAACTTTAGTGAACAAGGGATATGATCCCGAAGTAATTGATATCAGATCATTGAAACCATTTGATC TTCACATGATTGGAAATTCTGTGAAGAAGACACATCGTGTTATGATTGTGGAGGAATGCATGAGAACTGGTGGAATTGGTGCTAGCTTGACTGCAGCTAT CACTGAAAATTTCCATGACTATTTGGATGCTCCAATTGTGTGCTTGTCTTCACAAGATGTGCCAACTCCTTATGCAGGGACATTGGAGGAATGGACAGTG GTTCAACCTGCCCAGATTGTGACAGCAGTTGAGCAGCTGTGCCAGAAGTTACAGTAG
AA sequence Show only first row Show all	>Potri.004G129800.1 pacid=42795952 polypeptide=Potri.004G129800.1.p locus=Potri.004G129800 ID=Potri.004G129800.1.v4.1 annot-version=v4.1 MATIFQALGGAAAAAAASLTNSFDSKKLLLPSSRRSLAERKASSFLVVRSDGSLNLNLGSSNGRARTVDKLITNAVATKADTSAASSASKPGHELLLFEA LREGLEEEMDRDLHVCVMGEDVGHYGGSYKVTKGLAEKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIIEGMNMGFLLLAFNQISNNCGMLHYTSGGQF TIPVVIRGPGGVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTY SRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLHMIGNSVKKTHRVMIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTV VQPAQIVTAVEQLCQKLQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34590			Transketolase family protein (...		Potri.004G129800 [exp]	0	1	Pt-PDH.2
AT4G20760			NAD(P)-binding Rossmann-fold s...		Potri.011G157300 [exp]	5.47	0.8899
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Potri.003G095400 [exp]	7.34	0.8932
AT1G34430		EMB3003	embryo defective 3003, 2-oxoac...		Potri.013G114300 [exp]	8.83	0.8575
AT3G54770			RNA-binding (RRM/RBD/RNP motif...		Potri.008G044700 [exp]	9.79	0.8659
AT5G23200			unknown protein		Potri.005G092000 [exp]	12.48	0.8524
AT3G16060			ATP binding microtubule motor ...		Potri.003G053800 [exp]	13.19	0.8919
AT1G11680		EMB1738, CYP51A...	embryo defective 1738, CYTOCHR...		Potri.003G161700 [exp]	17.23	0.8759	CYP51G5,CYP51.1
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Potri.006G131100 [exp]	18.43	0.8753
AT1G64980			Nucleotide-diphospho-sugar tra...		Potri.011G117500 [exp]	20.49	0.8709
AT1G05090			dentin sialophosphoprotein-rel...		Potri.002G227200 [exp]	21.90	0.8798

Compare expression of checked genes

Potri.004G129800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.