Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15070 1760 / 0 Phosphoglycerate mutase-like family protein (.1.2) AT3G01310 1760 / 0 Phosphoglycerate mutase-like family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G076400 [exp] 1977 / 0 AT5G15070 1745 / 0.0 Phosphoglycerate mutase-like family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015343 [exp] 1802 / 0 AT3G01310 1726 / 0.0 Phosphoglycerate mutase-like family protein (.1.2) Lus10008307 [exp] 1721 / 0 AT5G15070 1662 / 0.0 Phosphoglycerate mutase-like family protein (.1.2) Lus10032191 [exp] 1548 / 0 AT5G15070 1465 / 0.0 Phosphoglycerate mutase-like family protein (.1.2) Lus10005263 [exp] 1449 / 0 AT5G15070 1377 / 0.0 Phosphoglycerate mutase-like family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0071 [poplar] [flax] His_phosphatase PF00328 [poplar] [flax] His_Phos_2 Histidine phosphatase superfamily (branch 2)
Representative CDS sequence Show only first row Show all	>Potri.004G129900.5 pacid=42794382 polypeptide=Potri.004G129900.5.p locus=Potri.004G129900 ID=Potri.004G129900.5.v4.1 annot-version=v4.1 ATGGTGGCAGAAGGAGGAGAAGAGGGGGGGAAGATAAAAATTGGAGTTTGTGTGATGGAAAAGAAGGTGAAATGCGGCTTCGAGTTGTTATCAGCTCCAA TGGGACAGATTCTTGAAAGATTACAAGCATTTGGTGAATTTGAGGTTATACATTTCGGGGATAAAGTGATTCTTGAAGATCCAATTGAGAACTGGCCAAT ATGCGATTGCTTGATTGCTTTCTATTCCTCTGGTTATCCCCTTGAAAAGGCTGAGGCATATGCCACTTTGAGGAAGCCTTTTCTAGTGAATGAGTTGGAG CCGCAACATCTTCTTCATGACCGGCGGAAGGTGTACGAGCGTCTTGAAATGTTTGGAATTCCTGTCCCGAGATATGCCCTTGTTAATAGGGAATTTCCAT ATCAAGAGCTGGATTGTTTTTTCGAAGAAGAAGATTTTGTTGAGGTACATGGAAGTCGTTTTTGGAAACCCTTTGTAGAGAAGCCTGTTGACGGGGATGA CCATAGTATCATGATATATTATCCCAGTTCAGCAGGTGGAGGTATGAAGGAATTGTTTAGGAAGGTTGGTAATCGGTCAAGTGAGTTCCATCCAGAGGTT AGAAGAGTGAGGCGTGAAGGCTCTTACATATATGAAGAATTTATGCCAACTGGAGGAACAGATGTGAAGGTGTACACTGTTGGTCCTGAATATGCACATG CTGAGGCAAGGAAGTCTCCTGTTGTTGATGGTGTTGTCATGCGAAATCCTGATGGAAAGGAAGTGAGGTATCCTGTGTTACTGACACCTAATGAGAAGCA AATGGCAAGAGATGTTTGCATTGCATTTAGCCAGGCTGTTTGTGGGTTTGATCTCCTGCGTTGTGAAGGACGATCATATGTTTGTGATGTAAATGGATGG AGTTTTGTGAAAAATTCCTACAAATATTATGATGATGCTGCTTGTGTGCTGAGAAAGTTGCTTTTGGATGCAAAAGCTCCTCACCTTTCATCAGCAATTC CGCCCACTTTACCATGGAAAGTCAATGAACCAGTCCAGCCTTCTGAGGGATTAACTCGTCAGGGTAGTGGGATTATTGGCACATTTGGGCAGTCTGAGGA GCTACGCTGTGTGATTGCCATTATTCGGCATGGTGATAGAACTCCCAAACAAAAGGTGAAGTTGAAGGTTACTGAGGAAAAGCTGCTAAACTTGATGTTA AAGTACAATGGGGGACGACCCAGATCTGAGACAAAACTTAAAAGTGCTGTTCAATTACAAGATCTGCTTGATGCAACACGAATACTTGTACCTCGTACAA GGCCAGGTCGAGAAAGTGATAGTGAGGCAGAAGACTTTGAGCATGCTGAAAAGCTACGTCAAGTTAAAGCAGTTCTTGAGGAGGGGGGACATTTCTCTGG TATTTATAGGAAGGTCCAGCTTAAACCTCTAAAGTGGGTTAAAGTTCCGAAAAGTAATGGTGAAGGTGAGGAAGAACGACCAGTTGAAGCTCTCATGGTT CTTAAATATGGAGGTGTTCTTACCCATGCTGGCAGAAAGCAGGCAGAAGAACTGGGTAGATACTTTCGAAATAATATGTATCCAGGTGAAGGGACAGGCC TGCTTCGTCTTCATAGTACATATCGTCACGACCTTAAAATTTACAGCTCTGATGAAGGTCGTGTACAGATGTCTGCAGCGGCATTTGCAAAGGGCCTCCT TGACCTGGAAGGACCGCTAACGCCAATTCTGGTTTCTCTTGTTAGCAAGGATTCCTCCATGCTGGATGGACTTGACAATGCCAGCATTGAGATGGAAGAA GCCAAGGCTAGGTTGAATGAGATTATAACTTCTGTTGCAAAGATAGTTAATAGCAATGGATCCTCTGAATGTCCTTGGATGACTGATGGAGCTGGACTAC CTTCAAATGCTTCTGAACTTCTCCCTAACCTGGTAAAATTGACTAAGAAGGTGACAGAACAAGTGAGACTACTTGCCATGGATGAAGATGAAGAACTTAC AGAGACAAGCTCATACGATGTAATTCCACCATATGACCAAGCAAAGGCTCTCGGTAAAACAAACATTGATATAGATCGTATTGCTGCTGGATTACCATGT GGAAGTGAGGGATTCCTGTTGATGTATGCTCGCTGGAAGAAGCTTGAAAGAGACTTGTATAATGAACGCAAAGAACGGTTTGACATAACACAAATCCCTG ATATTTATGACTCTTGCAAATATGATCTGTTGCACAATGCTCACCTTAATCTAGAGGGGCTGGATGAACTATTCAAAGTTGCTCAGTTACTTGCTGATGG TGTCATTCCTAACGAGTATGGAATTAATCCAAAGCAGAAATTGAAGATTGGCTCAAAGATTGCTCGACGTCTGTTGGGTAAAATATTGATTGATCTTAGG AACACACTTGAGGAAGCCATTAGTGTTGCTGAATTAAAATGTAATCAAGATCAACAATCAGCTTCTAAGAAGAATGATAAGGAAGACACAGATTATCAGT CGAAGCTTTTCATCAAGAATGAAGACATGAGAAGAACTAGCACCACTAGTGAAATATCAATGGATCAGGATGATGATGATGATAAAGAGACGAAATACCG TTTGGATCCAAAGTATGCAAATGTAAAGACACCAGACCGCCATGTTCGTACACGCCTCTATTTTACATCGGAATCACATATCCATTCCCTTATGAATGTT CTCCGTTACTGTAACCTGGATGAATCTCTTCAAGGAGAGGATAGCCTTGTTTGCCATAGTGCCTTGGAGCGTTTATACAAAACCAAGGAGCTTGATTACA TGAGCAATATTGTACTTAGGATGTTTGAGAATACTGAGGTCGCTTTAGAAGACCCAAAAAGGTTCCGCATAGAGATGACTTTCAGCCGTGGTGCAGACTT GTCTCCATTGGAGAAGAACGACAGTGAGGCCATCTCATTGCATCAGGAGCACACTCTTCCGATAATGGGTCCAGAAAGGCTGCAAGAAGTGGGATCCTAT CTAACATTAGAGAAAATGGAGATGATGTTTCGTCCTTTTGCTATGCCAGCGGAAGACTTTCCTCCACCTTCCACCCCTGCAGGATTCTCAGGCTACTTCT CAAAAAGTGCAGCAGTCCTTGAGCGCCTTGTTAATCTCTGGCCCTTCCATAAGCATGACAAGCATGCAAGTGCTAATGGAAAGTAG
AA sequence Show only first row Show all	>Potri.004G129900.5 pacid=42794382 polypeptide=Potri.004G129900.5.p locus=Potri.004G129900 ID=Potri.004G129900.5.v4.1 annot-version=v4.1 MVAEGGEEGGKIKIGVCVMEKKVKCGFELLSAPMGQILERLQAFGEFEVIHFGDKVILEDPIENWPICDCLIAFYSSGYPLEKAEAYATLRKPFLVNELE PQHLLHDRRKVYERLEMFGIPVPRYALVNREFPYQELDCFFEEEDFVEVHGSRFWKPFVEKPVDGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPEV RRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMARDVCIAFSQAVCGFDLLRCEGRSYVCDVNGW SFVKNSYKYYDDAACVLRKLLLDAKAPHLSSAIPPTLPWKVNEPVQPSEGLTRQGSGIIGTFGQSEELRCVIAIIRHGDRTPKQKVKLKVTEEKLLNLML KYNGGRPRSETKLKSAVQLQDLLDATRILVPRTRPGRESDSEAEDFEHAEKLRQVKAVLEEGGHFSGIYRKVQLKPLKWVKVPKSNGEGEEERPVEALMV LKYGGVLTHAGRKQAEELGRYFRNNMYPGEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEGPLTPILVSLVSKDSSMLDGLDNASIEMEE AKARLNEIITSVAKIVNSNGSSECPWMTDGAGLPSNASELLPNLVKLTKKVTEQVRLLAMDEDEELTETSSYDVIPPYDQAKALGKTNIDIDRIAAGLPC GSEGFLLMYARWKKLERDLYNERKERFDITQIPDIYDSCKYDLLHNAHLNLEGLDELFKVAQLLADGVIPNEYGINPKQKLKIGSKIARRLLGKILIDLR NTLEEAISVAELKCNQDQQSASKKNDKEDTDYQSKLFIKNEDMRRTSTTSEISMDQDDDDDKETKYRLDPKYANVKTPDRHVRTRLYFTSESHIHSLMNV LRYCNLDESLQGEDSLVCHSALERLYKTKELDYMSNIVLRMFENTEVALEDPKRFRIEMTFSRGADLSPLEKNDSEAISLHQEHTLPIMGPERLQEVGSY LTLEKMEMMFRPFAMPAEDFPPPSTPAGFSGYFSKSAAVLERLVNLWPFHKHDKHASANGK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15070			Phosphoglycerate mutase-like f...		Potri.004G129900 [exp]	0	1
AT3G59090			unknown protein		Potri.005G203600 [exp]	3.87	0.8117
AT2G05170		ATVPS11	vacuolar protein sorting 11 (....		Potri.014G165400 [exp]	6.32	0.7776	Pt-ATVPS11.1
AT3G09090		DEX1	DEFECTIVE IN EXINE FORMATION 1...		Potri.006G096100 [exp]	7.68	0.8287	DEX1.1
AT1G49040		SCD1	STOMATAL CYTOKINESIS-DEFECTIVE...		Potri.012G060800 [exp]	9.16	0.8211	SCD1.2
AT3G54190			Transducin/WD40 repeat-like su...		Potri.013G091600 [exp]	15.74	0.7255
AT3G03810		EDA30	embryo sac development arrest ...		Potri.019G036600 [exp]	17.60	0.7657
AT1G77260			S-adenosyl-L-methionine-depend...		Potri.002G077100 [exp]	19.23	0.8216
AT5G44280		ATRING1A	ARABIDOPSIS THALIANA RING 1A, ...		Potri.004G047000 [exp]	20.34	0.7958
AT1G10130		ATECA3, ECA3	ARABIDOPSIS THALIANA ER-TYPE C...		Potri.014G014700 [exp]	21.49	0.7854	Pt-ECA3.3
AT5G06120			ARM repeat superfamily protein...		Potri.003G189500 [exp]	21.79	0.7733

Compare expression of checked genes

Potri.004G129900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.