Plant FIBer expression Database

Potri.004G130000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G39940 556 / 0 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015345
[exp]
541 / 0 AT5G39940 521 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2)
Lus10001121
[exp]
523 / 0 AT5G39940 507 / 2e-177 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF03486 HI0933_like HI0933-like protein
Representative CDS sequence
>Potri.004G130000.3 pacid=42794572 polypeptide=Potri.004G130000.3.p locus=Potri.004G130000 ID=Potri.004G130000.3.v4.1 annot-version=v4.1
ATGAGCTTCCATTTAGCGCGTTTCATTCTCCAATTTGGAATATCTTCAAGAACTGCTAGTATTAACTCCAGTAGTGGTTATTACCATCTCCTTTTCAATC
CCAACAAACGCAAATTTACTGCAACTGCCATTCCTACAGCCCAAAAGTCAAGTAAAGAAGAGCTATTGGTAGTTGTTGGAGGTGGAGCAGCTGGAGTGTA
TGGAGCTATTAGAGCCAAGACTCTGGCTCCTAATCTTGATGTCCTTGTTGTAGAGAAAGGAAATCCTTTATCTAAGGTGAAAATATCAGGGGGAGGCAGA
TGCAACGTGACAAATGGGCATTGTTCTGACATTAAGATTTTAGCGGAACAATATCCCAGGGGTCACAGAGAATTCAAAGGTTCTTTCTTTGACATGCATG
GCCCAGCAGATACAATGTCCTGGTTTACTGATCATGGGGTGGCTTTAAAGATTGAGGAGGATGGAAGAGTGTTTCCCACCAGCAACAGCTCGTCTTCAGT
AATTGATTGTCTTCTGTCTGAAGCCAAACATAGAGGAGTTTCATTGCAGAATAGAAAAGTTGTATCAAGTGCATCTGTTGAAGCTGGTGGAAAGTTTCTT
TTGAAGCTTGAGAAACGTACAGTCAGTTTCGTTGAAAATGTCAAAGCTGATTATCTATTGATTGCCAGTGGGAGTAGCCAGCAGGGTCATAGTCTTGCAG
CTCAGCTTGGTCATTCAATTGTAGATCCAGTACCGAGCTTATTCACTTTTAAGATTGCAGATTCAGGACTAGCAGAATTATCAGGGGTTACATTTCCGAA
GGTTGAAGTGAAGCTGAAATTAGAAAACATTCTGAGGAACACACCACACCTTACACAGGTTGGACCCATGTTAGTGACACACTGGGGGCTCAGTGGGCCT
GTGATTCTTCGTCTTTCTGCTTGGGGGGCACGTGATCTGTTCAGTTCAGGTTACAAAGGCACACTTATAGTGGATTTTGTTCCTGATTTGCATATAGAAG
ACATGAAGTCAATCCTTAATCGACACAAGCATAAATATGCAAAACAAAAGGCACTTAATTCATGGCCATTGGGGTTCAGCCTTACAAAGAGATTTTGGAA
ATATATTGTGGATCGAGAGGGTCTGATTGGAGATGCACTGTGGGCCTCCATATCAAACAATTCCATTGTTTCTATTGCTCATCTTTTAAAGCATTGTGCA
TTTGAAATAACAGGAAAGGGCCAGTATAAGGATGAATTTGTCACTGCTGGAGGTGTTCCTTTATCTGAGATCTCTTTGAACACAATGGAAAGCAAGAAAT
GTGCACGTCTTTTCTTTGCAGGAGAGGTGCTGAATGTTGATGGGGTAACTGGTGGTTTTAACTTCCAGAATGCATGGTCTGGTGGATATATTGCTGGTAC
AAGCATTGGTGAACTAGCAGCTGAAGCTACTTTGGAAGAGGGCATTCTTTGA
AA sequence
>Potri.004G130000.3 pacid=42794572 polypeptide=Potri.004G130000.3.p locus=Potri.004G130000 ID=Potri.004G130000.3.v4.1 annot-version=v4.1
MSFHLARFILQFGISSRTASINSSSGYYHLLFNPNKRKFTATAIPTAQKSSKEELLVVVGGGAAGVYGAIRAKTLAPNLDVLVVEKGNPLSKVKISGGGR
CNVTNGHCSDIKILAEQYPRGHREFKGSFFDMHGPADTMSWFTDHGVALKIEEDGRVFPTSNSSSSVIDCLLSEAKHRGVSLQNRKVVSSASVEAGGKFL
LKLEKRTVSFVENVKADYLLIASGSSQQGHSLAAQLGHSIVDPVPSLFTFKIADSGLAELSGVTFPKVEVKLKLENILRNTPHLTQVGPMLVTHWGLSGP
VILRLSAWGARDLFSSGYKGTLIVDFVPDLHIEDMKSILNRHKHKYAKQKALNSWPLGFSLTKRFWKYIVDREGLIGDALWASISNNSIVSIAHLLKHCA
FEITGKGQYKDEFVTAGGVPLSEISLNTMESKKCARLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGELAAEATLEEGIL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G39940 FAD/NAD(P)-binding oxidoreduct... Potri.004G130000
[exp]
0 1
Potri.008G195300
[exp]
3.46 0.7528
AT2G32640 Lycopene beta/epsilon cyclase ... Potri.014G156800
[exp]
5.47 0.7454
Potri.001G014050
[exp]
6.32 0.7090
AT5G24060 Pentatricopeptide repeat (PPR)... Potri.004G072400
[exp]
7.00 0.7973
AT1G04140 Transducin family protein / WD... Potri.014G193900
[exp]
12.96 0.6525
AT4G11110 SPA2 SPA1-related 2 (.1) Potri.003G137100
[exp]
13.11 0.7319
AT5G26610 D111/G-patch domain-containing... Potri.013G002100
[exp]
16.88 0.6519
AT4G02600 MLO1, ATMLO1 MILDEW RESISTANCE LOCUS O 1, S... Potri.013G069900
[exp]
19.23 0.5868
AT2G18465 Chaperone DnaJ-domain superfam... Potri.001G308900
[exp]
21.74 0.6137
AT5G15940 NAD(P)-binding Rossmann-fold s... Potri.001G453500
[exp]
23.81 0.6709

Potri.004G130000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.