Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27100 421 / 5e-143 Actin cross-linking protein (.1) AT3G28630 338 / 3e-113 Protein of unknown function (DUF569) (.1), Protein of unknown function (DUF569) (.2) AT1G59710 312 / 8e-104 Protein of unknown function (DUF569) (.1) AT3G01311 290 / 3e-95 Protein of unknown function (DUF569) (.1) AT1G69890 260 / 8e-84 Protein of unknown function (DUF569) (.1) AT1G69900 167 / 6e-47 Actin cross-linking protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G075900 [exp] 693 / 0 AT1G27100 431 / 1e-147 Actin cross-linking protein (.1) Potri.010G035100 [exp] 499 / 1e-173 AT1G27100 541 / 0.0 Actin cross-linking protein (.1) Potri.008G193900 [exp] 478 / 2e-165 AT1G27100 494 / 2e-171 Actin cross-linking protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001124 [exp] 339 / 2e-113 AT3G28630 313 / 1e-105 Protein of unknown function (DUF569) (.1), Protein of unknown function (DUF569) (.2) Lus10015346 [exp] 332 / 1e-110 AT3G28630 317 / 3e-107 Protein of unknown function (DUF569) (.1), Protein of unknown function (DUF569) (.2) Lus10030804 [exp] 327 / 2e-109 AT1G59710 357 / 2e-124 Protein of unknown function (DUF569) (.1) Lus10036694 [exp] 299 / 1e-98 AT1G59710 343 / 5e-119 Protein of unknown function (DUF569) (.1) Lus10013281 [exp] 221 / 1e-69 AT1G59710 240 / 2e-79 Protein of unknown function (DUF569) (.1) Lus10037231 [exp] 182 / 2e-53 AT1G27100 192 / 2e-57 Actin cross-linking protein (.1) Lus10036693 [exp] 177 / 9e-53 AT1G27100 180 / 2e-54 Actin cross-linking protein (.1) Lus10037230 [exp] 173 / 8e-49 AT1G27100 181 / 3e-54 Actin cross-linking protein (.1) Lus10036692 [exp] 53 / 1e-08 AT1G27100 49 / 2e-08 Actin cross-linking protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0066 [poplar] [flax] Trefoil PF04601 [poplar] [flax] DUF569 Domain of unknown function (DUF569)
Representative CDS sequence Show only first row Show all	>Potri.004G130200.1 pacid=42796078 polypeptide=Potri.004G130200.1.p locus=Potri.004G130200 ID=Potri.004G130200.1.v4.1 annot-version=v4.1 ATGGAGTTCTTCAACCAGGCGAAAGCAGTGAGACTGAAGAGTCACCATGACAAGTACCTAGTTGCAGATGAGGATGAAGAAACTGTTCGGCAGAGCCGCA ACGGATCGTCACGAAGAGCCCGTTGGACAGTAGAGTTTGTTCAGGGAAACAACCATCAAATCCGACTAAAAAGTTGCTATGGAAAGTATCTTACAGCCTC GGAGAATCCGTTCTTACTAGGCATGGCAGGGAAAAGAGTGGTGCAAGACATGCCGGTATCTGTACAGGATTGTTCAATTGATTGGGAACCAAGAACTGAA GGGTTTCGTGTTAAGTTAAAGACAAGAGGAGGCAAGTTCTTGCGTGCCAACGGAAGCATGCCACCATGGAGAAACTCGGTCACACATGACATCCCACATA GGACTGTAACACAAGATTGGGTGCTTTGGGAAGTGGATGTGATGGACATAATCGAAAGTGATTTACAATTAAAGGGTTATATATCACCTGCTTCTAGCTT TCCTTCTTCAGTTGGATCGCAGCTTTCCAGTTCACAGCGTTCGGATGGAGACTCCCAGCTGGTCTCTAGTTTAGCTAGCAACACACATTCTCTTGCAAGA GAGAGTGCCATGGAACTCTTTGAGAAAGCAAAATCTGTTCGTCTTCGGAGCCACCATGACAAGTATCTATTAGCAGATGATGATGAAGAAACCGTTAGCC AAGAGCGAAATGGGACAATCAGGAACGCCAAATGGACGGTGGAAATTGTCGGAAATAGCAATGCTATACGTTTGAAAAGTTGTTTTGGCAAATATTTAAC AGCCAGTAACTTGCCATTGTTGCTGGGAATGAGAGGCAAGAAAGTACTGCAAACTTTGCCTGCTGGACGATTGGATTCTTCTGTGGAATGGGAGCCTATT AGGGAAGGTATCCAGGTTAGGCTCAGGACTCGTTACGGACAATATTTACGAGCAAATGGAGGTGTACCGCCATGGAGAAATCACATAACACATGATATTC CTCATAGATCTTCCACGCAGGATTGGATTCTATGGGATGTGGATGTTGTAGAGATAAGAGTTCAAGATCTTACACCTCCACCTCCACCACGACAACGACG ACCTAGTGATCAAATCGAAACGGCACCAAATTATGAGCCCAGTTCACCAACATGCATTTCAACTACACCACCGAAATTGACAAGACAAGAGTCTGATGAT TCTTTGGAAGGTTCACCAGTCAAAAATGAAGGCAGGGTGATACATTACAGTGTGTCTATGAATGAAGATGCAGATGATGTTGAAGAACATTCCTTCTCAT TTAAGGGAAGAATGGTGGAGGAATTGAAGAATAAGTTGGAAGAAGAGACAGGGCTCATTGATATCCAAATTTGTTCTAGGAATCCATTAAATGGGAAGTT CTATCCCCTTCGGTTACATCTTCCACCAAACAACACAGAAATGCATGTTGTTGTCGTTCCCTCATCAGGGAGAGGTTAG
AA sequence Show only first row Show all	>Potri.004G130200.1 pacid=42796078 polypeptide=Potri.004G130200.1.p locus=Potri.004G130200 ID=Potri.004G130200.1.v4.1 annot-version=v4.1 MEFFNQAKAVRLKSHHDKYLVADEDEETVRQSRNGSSRRARWTVEFVQGNNHQIRLKSCYGKYLTASENPFLLGMAGKRVVQDMPVSVQDCSIDWEPRTE GFRVKLKTRGGKFLRANGSMPPWRNSVTHDIPHRTVTQDWVLWEVDVMDIIESDLQLKGYISPASSFPSSVGSQLSSSQRSDGDSQLVSSLASNTHSLAR ESAMELFEKAKSVRLRSHHDKYLLADDDEETVSQERNGTIRNAKWTVEIVGNSNAIRLKSCFGKYLTASNLPLLLGMRGKKVLQTLPAGRLDSSVEWEPI REGIQVRLRTRYGQYLRANGGVPPWRNHITHDIPHRSSTQDWILWDVDVVEIRVQDLTPPPPPRQRRPSDQIETAPNYEPSSPTCISTTPPKLTRQESDD SLEGSPVKNEGRVIHYSVSMNEDADDVEEHSFSFKGRMVEELKNKLEEETGLIDIQICSRNPLNGKFYPLRLHLPPNNTEMHVVVVPSSGRG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G27100			Actin cross-linking protein (....		Potri.004G130200 [exp]	0	1
AT1G76490		HMGR1, HMG1, At...	3-HYDROXY-3-METHYLGLUTARYL COA...		Potri.009G169900 [exp]	1.73	0.9593
AT4G35160			O-methyltransferase family pro...		Potri.004G050400 [exp]	3.74	0.9207	FOMT2,Pt-OOMT2.13
AT3G59880			unknown protein		Potri.017G002100 [exp]	5.19	0.8590
AT1G68710			ATPase E1-E2 type family prote...		Potri.010G132700 [exp]	7.00	0.8902
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Potri.010G231500 [exp]	8.94	0.8902
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.005G013100 [exp]	10.00	0.8984
AT5G06740			Concanavalin A-like lectin pro...		Potri.006G193000 [exp]	12.96	0.9106
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.005G143900 [exp]	15.71	0.8763	IFS1.45,CYP81S8
AT1G66200		ATGSR2, GLN1;2	glutamine synthetase 1;2, glut...		Potri.005G093200 [exp]	22.22	0.8461	NCPGS.4
AT2G23770			protein kinase family protein ...		Potri.010G078700 [exp]	23.91	0.8639

Compare expression of checked genes

Potri.004G130200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.