Plant FIBer expression Database

Potri.004G130400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G65650 482 / 1e-172 UCH2 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (.1)
AT5G16310 472 / 1e-168 UCH1 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (.1)
AT4G17510 70 / 9e-14 UCH3 ubiquitin C-terminal hydrolase 3 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G075200
[exp]
628 / 0 AT1G65650 489 / 1e-175 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (.1)
Potri.003G081000
[exp]
77 / 3e-16 AT4G17510 380 / 2e-135 ubiquitin C-terminal hydrolase 3 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042047
[exp]
545 / 0 AT1G65650 484 / 8e-173 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (.1)
Lus10031062
[exp]
544 / 0 AT1G65650 502 / 1e-180 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (.1)
Lus10035444
[exp]
535 / 0 AT1G65650 494 / 1e-177 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (.1)
Lus10020144
[exp]
81 / 2e-17 AT4G17510 349 / 2e-123 ubiquitin C-terminal hydrolase 3 (.1)
Lus10026940
[exp]
68 / 3e-12 AT4G17510 327 / 4e-108 ubiquitin C-terminal hydrolase 3 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0125 Peptidase_CA PF01088 Peptidase_C12 Ubiquitin carboxyl-terminal hydrolase, family 1
Representative CDS sequence
>Potri.004G130400.7 pacid=42794422 polypeptide=Potri.004G130400.7.p locus=Potri.004G130400 ID=Potri.004G130400.7.v4.1 annot-version=v4.1
ATGTCTTGGTGCACTATTGAGTCTGATCCAGGTGTGTTCACGGAACTTATACAACAAATGCATGTAAAAGGTGTACAGGTTGAAGAGTTGTATTCATTGG
ACCTTGATTCTCTTGACAGCCTGAGACCTGTATATGGGTTGGTTTTTCTTTTCAAATGGCGCCCAGAAGAGAAAGATGAACGTGTTGTAATTACGGATCC
AAATCCTAATCTCTTTTTTGCCCGTCAGGTTATTAACAATGCTTGTGCAAGTCAAGCAATTTTGTCTATCCTCATGAACTGCCCAGATATGGACATTGGT
CCAGAATTGTCGAAATTAAAAGAATTCACCAAGAATTTTCCTCCTGAGCTCAAAGGGTTGGCTATTAATAACTGCGAAGCTATACGTGCAGCCCATAACA
GTTTTGCACGACTTGGGCCTTTCGTTCCTGAAGAGCAGAAGGCAGCCAGCAAAGAAGATGACGTGTACCATTTTATAAGTTACTTGCCTGTTGATGGAGT
GCTATATGAACTTGATGGATTGAAAGAGGGACCCATCAGCCTTGGTCAGTGCACTGGTGGGCATGGTGATATGGACTGGCTGCTTATGGTGCAGCCAGTG
ATCCAGGAACGCATAGAAAGGCATTCCAATAGTGAGATAAGATTTAATCTCTTGGCAATAGTCAAAAACAGGAAAGAAATGTATACTGCTGAACTCAAGG
AGCTCCAAAAGAGGAGGGAGCGTATCGTGCAGCAGCTAGCTGCTTTCCAGGCAGAAAGACTGGTCGACAATGGCAACTATGAATCCCTGAACAAATCCCT
GTCTGAAGTGAATGCTGCGATTGAAAGTGCTACAGAAAAGATTTTGATGGAGGAAGAAAAATTCAAGAAATGGAGAACAGAAAATATCCGTAGGAAGCAC
AATTATATTCCGTTTTTGTTCAACTTCCTCAAGATTCTTGCTGAAAAGAAGCAACTGAAGCCCCTTATAGAGAAGGCCAAGCAAAAAACCAGCGCCTCCA
AGTAA
AA sequence
>Potri.004G130400.7 pacid=42794422 polypeptide=Potri.004G130400.7.p locus=Potri.004G130400 ID=Potri.004G130400.7.v4.1 annot-version=v4.1
MSWCTIESDPGVFTELIQQMHVKGVQVEELYSLDLDSLDSLRPVYGLVFLFKWRPEEKDERVVITDPNPNLFFARQVINNACASQAILSILMNCPDMDIG
PELSKLKEFTKNFPPELKGLAINNCEAIRAAHNSFARLGPFVPEEQKAASKEDDVYHFISYLPVDGVLYELDGLKEGPISLGQCTGGHGDMDWLLMVQPV
IQERIERHSNSEIRFNLLAIVKNRKEMYTAELKELQKRRERIVQQLAAFQAERLVDNGNYESLNKSLSEVNAAIESATEKILMEEEKFKKWRTENIRRKH
NYIPFLFNFLKILAEKKQLKPLIEKAKQKTSASK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G65650 UCH2 Peptidase C12, ubiquitin carbo... Potri.004G130400
[exp]
0 1
AT5G10810 ATER ARABIDOPSIS THALIANA ENHANCER ... Potri.018G017300
[exp]
1.41 0.9303
AT1G77360 Tetratricopeptide repeat (TPR)... Potri.003G045800
[exp]
3.46 0.9056
AT5G12240 unknown protein Potri.009G069000
[exp]
3.46 0.8993
AT5G14250 CSN3, FUS11, CO... FUSCA 11, COP9 SIGNALOSOME SUB... Potri.017G066300
[exp]
4.89 0.8833
AT5G20700 Protein of unknown function (D... Potri.006G078300
[exp]
5.09 0.8368
AT3G63340 Protein phosphatase 2C family ... Potri.005G214500
[exp]
6.00 0.8673
AT3G60800 DHHC-type zinc finger family p... Potri.001G117100
[exp]
6.70 0.8912
AT4G37020 unknown protein Potri.007G043200
[exp]
7.34 0.8861
AT2G13290 beta-1,4-N-acetylglucosaminylt... Potri.018G127900
[exp]
7.48 0.8930
AT2G30942 Protein of unknown function (D... Potri.002G263100
[exp]
7.74 0.8481

Potri.004G130400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.