Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40340 219 / 8e-59 Tudor/PWWP/MBT superfamily protein (.1) AT3G27860 164 / 5e-42 Tudor/PWWP/MBT superfamily protein (.1) AT3G09670 142 / 2e-34 Tudor/PWWP/MBT superfamily protein (.1.2) AT5G02950 140 / 3e-34 Tudor/PWWP/MBT superfamily protein (.1) AT5G27650 125 / 8e-29 Tudor/PWWP/MBT superfamily protein (.1) AT3G05430 122 / 7e-28 Tudor/PWWP/MBT superfamily protein (.1) AT3G48190 97 / 4e-20 PIG1, ATATM, ATM pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) AT2G48160 56 / 1e-07 Tudor/PWWP/MBT domain-containing protein (.1) AT3G63070 50 / 1e-05 Tudor/PWWP/MBT domain-containing protein (.1) AT3G61740 47 / 9e-05 SDG14, ATX3 SET domain protein 14 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G081500 [exp] 170 / 5e-43 AT3G48190 131 / 2e-30 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) Potri.008G044600 [exp] 168 / 3e-42 AT5G02950 279 / 2e-80 Tudor/PWWP/MBT superfamily protein (.1) Potri.010G216900 [exp] 168 / 4e-42 AT3G09670 235 / 7e-65 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.006G131800 [exp] 148 / 4e-36 AT3G09670 236 / 2e-66 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.016G085500 [exp] 144 / 1e-35 AT3G09670 260 / 4e-77 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.005G026800 [exp] 125 / 6e-29 AT5G27650 431 / 1e-132 Tudor/PWWP/MBT superfamily protein (.1) Potri.013G018700 [exp] 114 / 1e-25 AT5G27650 687 / 0.0 Tudor/PWWP/MBT superfamily protein (.1) Potri.008G209900 [exp] 62 / 1e-10 AT5G27650 149 / 1e-41 Tudor/PWWP/MBT superfamily protein (.1) Potri.014G138700 [exp] 66 / 2e-10 AT3G63070 400 / 5e-117 Tudor/PWWP/MBT domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014546 [exp] 517 / 1e-166 AT5G40340 184 / 2e-47 Tudor/PWWP/MBT superfamily protein (.1) Lus10032141 [exp] 511 / 7e-165 AT5G40340 187 / 3e-48 Tudor/PWWP/MBT superfamily protein (.1) Lus10023486 [exp] 156 / 3e-38 AT5G02950 207 / 2e-55 Tudor/PWWP/MBT superfamily protein (.1) Lus10040367 [exp] 154 / 1e-37 AT5G02950 209 / 8e-56 Tudor/PWWP/MBT superfamily protein (.1) Lus10016267 [exp] 142 / 2e-34 AT3G09670 276 / 9e-82 Tudor/PWWP/MBT superfamily protein (.1.2) Lus10012010 [exp] 137 / 5e-33 AT3G09670 283 / 2e-85 Tudor/PWWP/MBT superfamily protein (.1.2) Lus10015177 [exp] 122 / 6e-28 AT5G27650 634 / 0.0 Tudor/PWWP/MBT superfamily protein (.1) Lus10031498 [exp] 120 / 3e-27 AT5G27650 633 / 0.0 Tudor/PWWP/MBT superfamily protein (.1) Lus10002382 [exp] 103 / 3e-22 AT3G48190 115 / 1e-25 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) Lus10042113 [exp] 94 / 3e-19 AT3G48190 115 / 1e-25 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [poplar] [flax] Tudor PF00855 [poplar] [flax] PWWP PWWP domain
Representative CDS sequence Show only first row Show all	>Potri.004G130600.2 pacid=42795378 polypeptide=Potri.004G130600.2.p locus=Potri.004G130600 ID=Potri.004G130600.2.v4.1 annot-version=v4.1 ATGGAAGCTAAAACCCTAGCAGCTGATAAAACCACTGACCCAGGTGCCAAAACCATCAAAGAAAACGGAAAGGAAGGTTTTGTTGATGATTTAGCTCCCG CCTTTGATGTTAATAATCTTGAGGATTCGGAGATTAATGGAGTGTCTTCTTTGTTAAAGATGCAAGAAAGTGGGTGTCTTAAAGGGTTAGAGTCTGTTTT GGATTATCTTAACAAGAATGAGCAAAGGGGCTTTGGGGATCATGGTTTGAATTCTGATTTACTAGTTGCAAATGAGAGGAGTATTGATGATGCTGATGCT GATGATGGTAGGGAAGGAGAGGTGGATATAGCAGATGATCAATTTAGGGTTGGCGATTTTGTGTGGGGTAAGATTAAGAGTCATCCATGGTGGCCGGGGC GGGTTTATGATCCTTCAAATGCATCTGATTACGCAAAGAAAGTTAAACAAAGAGATAAAATTCTTGTAGCTTATTTTGGAGATAGCACGTTTGCCTGGTG CAATCCATCTCAGTTGAGCCCTTTCGAGGAGAATTTTGTGGAAATGTTCAAGCAGAGTAACTCAAAAAGCTTTGTGAATGCAGTAAAGGAGGCGGTGGAT GAGGTTGGTAGACTTGTGGATTTGAAGATGACCTGTGCTTGCGTGCCTCAGGAGAATTTGATTGGGTTTGGTAGATCATTGGCAGTGAATACTGGAATTA AGGAAGGACTTCTTGTGCCTGAAGGTGGAATTGAGAAGTTCTCAACTGCTTTGTTTGAACCAGCAGCATTCCTTCCTGTATTGAAAGATGTTGCTCAGTT TGTCAGTACTGTTAATATGCTGGAAGTCACAGTGTTAAAGAACTGGCTGTCAGCTTTTTATCGAGCAAAAGGAGGTTACCAGTTGCCAACTTACCATGAG CCACTGCCAATTTCAGGCCTTGATGATGACACCAGAAATTGGATGATGGACTTGACTGATCACAGTGGTGGAGTAGAAGCCAGAATTCAGGGTCCAGTTG AGGAAGACTGGCTTTCTTCACCGACAAGCTGTAAATTTGGCCAAACCACCCAGGGCCCTTTGCAGAAATGTCAAGATATGTCAGAGGATAGATGGAATCG GAGAAGGAAACAGAAAAGCATTGCTGAAATTTTGCGAGGGGATATAGATGCTGAGGCTGAAAACAAGGAGGATGATGTGACTAAAGAAGAAACAGAGTCG AGGAAACAAACATCTTCCGCTGACAGAGAGACAGGGAAAGGTGGAGGTAAAATTATGGGACAGGTGATGGATGCTAAGATCCAAAATGTGGTGGGGGATG TGCCTATAGACAAAGCAAGCTCAGGTAAACCTGCATCTTCATCTGGGAGGGAAAAGAGAAAGGCAAGTGATAAAGCTGACGCTGAGGACAAAAGTCAAGT GGGGGATGTGGGTGAAGCAGGAACAAACTCTGGCAAGCATGAATCTACATCTGGCAGGAAGAAGAGGAAAGTCAGTGATAAAGCTGCTGCTGATTGCAAA AATGAGGTGGGAAATGCGGCTGAATTAAGATCAAACTCAGAAAAGTCTGCATCATCATCTGGGAGGAAGAAGAGGAAAGTCAGTGATGATGTCAATGCTG ATGGTGGCAGTGATTCGGTTTCTAGACTGAGGAAAGAGACAACACTTTCTGAGTCTTTTGTAGCATCTGATATTGAAGTTGGTGGTAGGGACGTCAAGAA GGTAAGTTCTGCTTTTGAAAATGATGATGCTGAGGGAAATATAGATGAAACAAGGGACAAAACTGTGTCTGGGAAGAAGAAGATAGATGGGGGATTAAGT GATCTAAGGGATGGTGATGAGGCTAAAGCTCGAATTGAGAAAGGTTCATTCTCAAGGGAAAGAAGACAGAGCAAGTACTTGTCCCCTCCCTACACAAATA TTAATAGAGGGCAATACACAAATATTAATAGAGGGCAAAGAAAGAAAGGTTTAGAAGCAGAATCCAAGAAAATTTCCGATGATCCCCAATTAAGGGAACG GATGACCATGGCTGCAGGCCATCTTATCTGCGAGAAATTTCAGATGAAAGCCTACGAAGAAACTGGTGGAGATCAGATATCAGACAGTTCAGGTCCTCAG ACACCAAAACAAGATCAGAACAACATCATTGATCTAGTCAAGATTAAGGCACCTGTCAATCAAATGCTATCTCATGTCCAGTCTTTAGCTCTTAATCCGA CATATCTGAAGGAAGGCAATGCTCTTGGTTTTGTTGAGGAATTTGTTTCCGCATTCAGAAGTTCAATCTATCGCAATGGATCCAACTACAAAATGTACAA CAAACATCAACCAGGAAGAACAAAGAGAAAGTCCCAAGAATCTGAACCTGGGACATCAGGGGTCGAGCAAAATCTGGCTGACCAAAGTTCTGCTGATTAT AAATCCAGGTCAAAAAGGCCCAAAAAGAGTGAAGAAGCAAAATTGGACAAGCTCAGAGTCAGGCAAGCTGCCACTGCAACAGATGTGAAGACAAGTGACA AGGAATCAGATGGGAAATCTCAGGCTGCTGCTGCCCTTTATGCGACATTTTCTCCGGGATCTTCTCTTCCTTCAAAGAATGATCTTATTATGATATATGA GAAATTTGGGCCCCTTAATCAAGAGGAAACGGAGGTGTTCTACAATAATGGCTGTGCAAGAATTGTCTTTTTAAGGAGCCCTGAAGCAGAGAAAGCCTTC AACGATTCCCAAATTGCCAGTCCTTTTGGAGCAGCGAGTGTGACTTTCCAGCTTCAATATCTCTCATCAGCTGAAACAAAGACCCCTGAACTCAGAGGGA TACCAAGCTTGAAATCTTCTCCTCTGGCCAAGGACAAAACCAACCTGGACAAGGAATTGGCTTCACAATCATCTGCTAATGATGTGTCACAACTGAACTA CATAAAGCAGAAGCTTGAGATGATGAGTTCAATACTGAAAATGTCCGATGGAACAGATATGAAATCCAAATTAGAAGGGGAAATTAAAGGCCTATTGGAG AAGCAAGCAGTCAAGGATTCTTGTATCTTGTTCACTCTTGCACTGCATGACTACTCGCTATCAGGAGATGGCAGGGAGAAATATTATTGA
AA sequence Show only first row Show all	>Potri.004G130600.2 pacid=42795378 polypeptide=Potri.004G130600.2.p locus=Potri.004G130600 ID=Potri.004G130600.2.v4.1 annot-version=v4.1 MEAKTLAADKTTDPGAKTIKENGKEGFVDDLAPAFDVNNLEDSEINGVSSLLKMQESGCLKGLESVLDYLNKNEQRGFGDHGLNSDLLVANERSIDDADA DDGREGEVDIADDQFRVGDFVWGKIKSHPWWPGRVYDPSNASDYAKKVKQRDKILVAYFGDSTFAWCNPSQLSPFEENFVEMFKQSNSKSFVNAVKEAVD EVGRLVDLKMTCACVPQENLIGFGRSLAVNTGIKEGLLVPEGGIEKFSTALFEPAAFLPVLKDVAQFVSTVNMLEVTVLKNWLSAFYRAKGGYQLPTYHE PLPISGLDDDTRNWMMDLTDHSGGVEARIQGPVEEDWLSSPTSCKFGQTTQGPLQKCQDMSEDRWNRRRKQKSIAEILRGDIDAEAENKEDDVTKEETES RKQTSSADRETGKGGGKIMGQVMDAKIQNVVGDVPIDKASSGKPASSSGREKRKASDKADAEDKSQVGDVGEAGTNSGKHESTSGRKKRKVSDKAAADCK NEVGNAAELRSNSEKSASSSGRKKRKVSDDVNADGGSDSVSRLRKETTLSESFVASDIEVGGRDVKKVSSAFENDDAEGNIDETRDKTVSGKKKIDGGLS DLRDGDEAKARIEKGSFSRERRQSKYLSPPYTNINRGQYTNINRGQRKKGLEAESKKISDDPQLRERMTMAAGHLICEKFQMKAYEETGGDQISDSSGPQ TPKQDQNNIIDLVKIKAPVNQMLSHVQSLALNPTYLKEGNALGFVEEFVSAFRSSIYRNGSNYKMYNKHQPGRTKRKSQESEPGTSGVEQNLADQSSADY KSRSKRPKKSEEAKLDKLRVRQAATATDVKTSDKESDGKSQAAAALYATFSPGSSLPSKNDLIMIYEKFGPLNQEETEVFYNNGCARIVFLRSPEAEKAF NDSQIASPFGAASVTFQLQYLSSAETKTPELRGIPSLKSSPLAKDKTNLDKELASQSSANDVSQLNYIKQKLEMMSSILKMSDGTDMKSKLEGEIKGLLE KQAVKDSCILFTLALHDYSLSGDGREKYY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G40340			Tudor/PWWP/MBT superfamily pro...		Potri.004G130600 [exp]	0	1
AT1G32750		GTD1, TAF1, HAF...	TBP-ASSOCIATED FACTOR 1, HISTO...		Potri.017G047600 [exp]	1.73	0.9202
AT1G77180		SKIP	chromatin protein family (.1.2...		Potri.006G163700 [exp]	2.44	0.8944
AT1G32490		EMB2733, ESP3	ENHANCED SILENCING PHENOTYPE 3...		Potri.015G008700 [exp]	3.16	0.9043
AT5G08550		ILP1	increased level of polyploidy1...		Potri.008G002600 [exp]	4.00	0.8909
AT3G10030	Trihelix		aspartate/glutamate/uridylate ...		Potri.010G233500 [exp]	4.47	0.8833
AT2G45620			Nucleotidyltransferase family ...		Potri.014G073300 [exp]	6.32	0.8421
AT5G45790			Ubiquitin carboxyl-terminal hy...		Potri.016G030300 [exp]	6.55	0.8418
AT1G22310		ATMBD8, MBD8	methyl-CPG-binding domain 8 (....		Potri.001G312900 [exp]	7.21	0.8500
AT5G58340	MYB		myb-like HTH transcriptional r...		Potri.013G154500 [exp]	10.39	0.8077
AT4G21670		FRY2, FLP1, ATC...	FIERY 2, C-terminal domain pho...		Potri.011G049400 [exp]	12.00	0.8800

Compare expression of checked genes

Potri.004G130600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.