Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34440 137 / 2e-41 MADS AGL29 AGAMOUS-like 29 (.1) AT2G24840 125 / 9e-36 MADS DIA, AGL61 DIANA, AGAMOUS-like 61 (.1) AT5G60440 120 / 2e-33 MADS AGL62 AGAMOUS-like 62 (.1) AT3G66656 115 / 1e-32 MADS AGL91 AGAMOUS-like 91 (.1) AT1G01530 102 / 5e-27 MADS AGL28 AGAMOUS-like 28 (.1) AT4G36590 100 / 5e-26 MADS MADS-box transcription factor family protein (.1) AT1G47760 94 / 1e-24 MADS AGL102 AGAMOUS-like 102 (.1) AT1G65360 93 / 1e-23 MADS AGL23 AGAMOUS-like 23 (.1) AT1G28460 91 / 5e-23 MADS AGL59 AGAMOUS-like 59 (.1) AT2G45660 85 / 1e-20 MADS ATSOC1, SOC1, AGL20 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G130900 [exp] 144 / 8e-44 AT3G04100 140 / 5e-42 AGAMOUS-like 57 (.1) Potri.001G251400 [exp] 130 / 2e-38 AT5G60440 112 / 3e-30 AGAMOUS-like 62 (.1) Potri.017G047300 [exp] 128 / 6e-37 AT5G60440 185 / 2e-57 AGAMOUS-like 62 (.1) Potri.009G084100 [exp] 125 / 3e-36 AT5G60440 163 / 2e-49 AGAMOUS-like 62 (.1) Potri.009G084200 [exp] 122 / 7e-35 AT5G60440 211 / 2e-68 AGAMOUS-like 62 (.1) Potri.007G113800 [exp] 120 / 5e-34 AT5G60440 191 / 4e-60 AGAMOUS-like 62 (.1) Potri.009G045900 [exp] 110 / 1e-30 AT3G04100 121 / 2e-34 AGAMOUS-like 57 (.1) Potri.008G041500 [exp] 107 / 3e-29 AT5G60440 147 / 4e-43 AGAMOUS-like 62 (.1) Potri.009G046100 [exp] 103 / 2e-28 AT5G60440 115 / 6e-32 AGAMOUS-like 62 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011787 [exp] 141 / 8e-43 AT2G34440 133 / 1e-39 AGAMOUS-like 29 (.1) Lus10040832 [exp] 137 / 4e-41 AT2G34440 135 / 1e-40 AGAMOUS-like 29 (.1) Lus10020511 [exp] 132 / 2e-38 AT5G60440 162 / 9e-49 AGAMOUS-like 62 (.1) Lus10012449 [exp] 130 / 1e-37 AT5G60440 157 / 4e-47 AGAMOUS-like 62 (.1) Lus10016563 [exp] 124 / 4e-36 AT2G34440 134 / 5e-40 AGAMOUS-like 29 (.1) Lus10030663 [exp] 124 / 6e-36 AT2G24840 122 / 2e-34 DIANA, AGAMOUS-like 61 (.1) Lus10030824 [exp] 119 / 2e-34 AT2G24840 124 / 4e-35 DIANA, AGAMOUS-like 61 (.1) Lus10031073 [exp] 100 / 6e-26 AT5G60440 129 / 5e-36 AGAMOUS-like 62 (.1) Lus10015271 [exp] 93 / 7e-24 AT2G24840 114 / 6e-31 DIANA, AGAMOUS-like 61 (.1) Lus10035456 [exp] 92 / 7e-23 AT5G60440 124 / 5e-34 AGAMOUS-like 62 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [poplar] [flax] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Potri.004G131100.1 pacid=42795125 polypeptide=Potri.004G131100.1.p locus=Potri.004G131100 ID=Potri.004G131100.1.v4.1 annot-version=v4.1 ATGGGCAGGCGAAAGATAGAGATAGAGATGGTGAAAGATAGCAACTCTCGGCAAGTGACTTTCTCAAAGCGCCGAACAGGGGTTTTCAAGAAAGCCAACG AGCTTGCTACCTTGTGTGGTGTGCAAATTGCCATCATCGTCTTCTCTCCAGGGGGGAAACCATTTTCATTTGGCCACCCCAATGTCGAGTTTGTGGCTCA GAGGTTTCTAAATCGGGATAAGAAACCCAAGGTTTCGGCTGGTAGCCTTGTTGATTCTCAACAAGAGGCTAGATTGGAGAAGCTTAATAGTCAACTCAAT GATATTCTCAGGAAACTTCAGTATGAAAGAAAGAGGGGGGAATTGCTAGAGAAGGCAATGAAATTAAAGGGTTCGGAACCCAAACTTATTGGTGAGCTAA ATCTTGATGAACTTCGGAAGATGAAGGGAGAACTGGAGGAGCTTCAAGAAAAGTTGCGAGGGCGTGTTACAGAAATGGAGGCGTCCTCTTCACTGCTACT TCTGTCTAAGAAACCTACTAGAGAGAAACATCAGTAG
AA sequence Show only first row Show all	>Potri.004G131100.1 pacid=42795125 polypeptide=Potri.004G131100.1.p locus=Potri.004G131100 ID=Potri.004G131100.1.v4.1 annot-version=v4.1 MGRRKIEIEMVKDSNSRQVTFSKRRTGVFKKANELATLCGVQIAIIVFSPGGKPFSFGHPNVEFVAQRFLNRDKKPKVSAGSLVDSQQEARLEKLNSQLN DILRKLQYERKRGELLEKAMKLKGSEPKLIGELNLDELRKMKGELEELQEKLRGRVTEMEASSSLLLLSKKPTREKHQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34440	MADS	AGL29	AGAMOUS-like 29 (.1)		Potri.004G131100 [exp]	0	1
AT3G13470		Cpn60beta2	chaperonin-60beta2, TCP-1/cpn6...		Potri.003G222400 [exp]	2.82	0.9035	Pt-LEN1.1
AT5G20720		CHCPN10, ATCPN2...	CHLOROPLAST CHAPERONIN 10, cha...		Potri.006G138600 [exp]	4.00	0.8831	CPN21.1
AT2G28000		Cpn60alpha1, SL...	SCHLEPPERLESS, chaperonin-60al...		Potri.004G213400 [exp]	4.58	0.8704	SLP.2
AT5G67590		FRO1	FROSTBITE1, NADH-ubiquinone ox...		Potri.002G117800 [exp]	7.74	0.8595
AT4G01200			Calcium-dependent lipid-bindin...		Potri.002G166400 [exp]	9.38	0.8609
AT4G24280		CPHSC70-1	chloroplast heat shock protein...		Potri.004G224400 [exp]	10.09	0.8383	Pt-HSC70.1
AT5G15450		AtCLPB3, APG6, ...	CASEIN LYTIC PROTEINASE B-P, A...		Potri.017G090600 [exp]	12.40	0.8344
AT5G35080			unknown protein		Potri.006G061600 [exp]	17.49	0.7228
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Potri.009G134000 [exp]	17.83	0.6517	MYB.48,MYB156
AT1G02020			nitroreductase family protein ...		Potri.002G146100 [exp]	20.39	0.7972

Compare expression of checked genes

Potri.004G131100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.