Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13620 640 / 0 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT1G05580 570 / 0 ATCHX23 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) AT2G31910 515 / 1e-170 ATCHX21 cation/H+ exchanger 21, cation/H+ exchanger 21, cation/H+ exchanger 21 (.1) AT4G23700 484 / 5e-159 ATCHX17 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) AT5G41610 468 / 6e-153 ATCHX18 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) AT3G17630 462 / 2e-150 ATCHX19 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) AT3G53720 423 / 3e-135 ATCHX20 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) AT1G64170 409 / 6e-130 ATCHX16 cation/H+ exchanger 16, cation/H+ exchanger 16, cation/H+ exchanger 16 (.1) AT1G06970 366 / 2e-113 ATCHX14, CHX14 cation/hydrogen exchanger 14 (.1) AT2G30240 334 / 1e-101 ATCHX13 CATION/H+ EXCHANGER 13, Cation/hydrogen exchanger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G105200 [exp] 655 / 0 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.007G111400 [exp] 583 / 0 AT1G05580 645 / 0.0 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) Potri.010G189100 [exp] 530 / 2e-176 AT2G13620 595 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.007G102700 [exp] 517 / 8e-172 AT2G13620 525 / 3e-175 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.001G096320 [exp] 499 / 6e-165 AT5G41610 1069 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.013G142301 [exp] 499 / 1e-164 AT5G41610 1067 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.003G134900 [exp] 485 / 2e-159 AT5G41610 989 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.010G004800 [exp] 478 / 4e-156 AT3G17630 1091 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.010G005200 [exp] 476 / 1e-155 AT3G17630 1101 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004932 [exp] 817 / 0 AT2G13620 568 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10040881 [exp] 813 / 0 AT2G13620 572 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10015268 [exp] 690 / 0 AT2G13620 507 / 1e-166 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10035312 [exp] 636 / 0 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10030013 [exp] 636 / 0 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10039138 [exp] 492 / 1e-160 AT2G13620 573 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10017540 [exp] 470 / 1e-152 AT5G41610 1013 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10032332 [exp] 464 / 5e-151 AT4G23700 1030 / 0.0 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) Lus10025322 [exp] 375 / 2e-117 AT3G53720 793 / 0.0 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) Lus10026408 [exp] 358 / 2e-110 AT2G13620 441 / 2e-142 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [poplar] [flax] CPA_AT PF00999 [poplar] [flax] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Potri.004G131300.1 pacid=42794094 polypeptide=Potri.004G131300.1.p locus=Potri.004G131300 ID=Potri.004G131300.1.v4.1 annot-version=v4.1 ATGGATCTCAATGAACTGCAAAATTTTTATCATGTACGAAATGCATCAAATAAACCTTGTTTTGTCGTGAATATCACTGCTGAACATGGAATCTGGCAAT CCGAAAATCCCTTGACTCAATCCCTTCCTCTTTTGGCAATGCAACTCGCCGCCACCATCTTCGTCACTCGTGCTGTTTATTACCTCCTGAGACCTTTGGC CGTTCCTCGAATCGTCACAGATTTTCTGGGTGGTGTGCTGATGGGGCCAAGTGCGTTGAGTCTGTTCCCTAAGTTTCGCGATATGTTCCCTTTGAGAAGC ATCGTGACAGTTGAAACAGTAGCATATTGGGCATTGTGTTGCCACTTGTTTTTGATTGGTTTAGAATTTGACATGTCTGTAATTGAAAATTTAACACGGA CAAGCAAGAAGGCGATCCATATTGCTATTGCAGGAGTCCTCATTCCTTTCATTATGGGAATTGGCCTTTTCTTCCTCATGAATCAAGTCCCCGGAGGAGG ATATAATCCAACCGGATGCGTCTACGTAGGTTTGTCACTGGCAGTCACAGGCTACCCTATTGTTGCTCGAGTTTTAAATGATGTCAAGCTACTCCACTCG GATATTGGAAGAATGGCCATGTCAGCTTCTCTTGTCACTGACTTGATTTCTTGGATTCTTGTTATTATCGGGATAGCATTTTCTAACCAAACGAGTGGTG GTGCCTCAGTAGCAGTTCTTTCAACTGTTGGTTTCGCTTTGTTTTGCATTTTCGTAGTCCGCCCGGCTCTGGCCATCATAATCAGCAAAACATCTAAAGA AAACGACTATAGTGAGAATTATCTATGTTTTGTTCTGGTTTCGATTTCTGCATTTGCGGTTGTTACTGATGTTCTCGGGACCAACTCCATTGTTGGGGCT TTTATTTTCGGGTTTATCATGCCGAATAGGATTCTAGCTGCTGCGTTCCTAGACAAATTTGAGGAATTTGTGACGGGGTATTTGTTGCCTCTATTCTTCA CAATTTGTGGAATCAGAATAGATATTTGGTCACTTTTTGATAAAAAGGCTCACTTGGCAATGGGGTCGGTGGTTGTGGTACTTTCTTGTTCAGCAAAGAT TCTAAGCACTCTCCTTGTTTCTTTTTACGAAAACGTGCCAGCTAGAGATGGTTTCTCTCTTGGAATAGTTTTGAATACCAAAGGCATCTTGGCAATTTTG ATCCTTCAGTTAGGCAATAGCGGAGAATTCTTGAATAAACGAGATTATACAGTGATGGCGATTGCCATTTTGTTAATGACGGGGGTTGTGGCTCCTGTGA CAGCCTCCATTTACCGCCCCGCAAAACATTTATCCAATTACAAGCGAAGGACAATACAGAAAGGAAGACAAGATGGTGAATTACGAATCCTAGCATGCTT CCAGAATTTCCGCAATGTATCAGGCATGATTAGCCTCATAGACTCCTCCAATGCTACCAGAGAATCTCCTCTCACTGTCTTTGCACTCCACGTCCTTGAG CTCACTGGCCGTGCCTCTGCTATGCTCATTGTCCACAGCACGGGCGGCAAATCCAGTGGCTACTCTAGACATGGCCGCAAAAACTCCCATTCCGAAAAAA TAGTTACTGCACTTGAAACTTACCAGACTCTAAATGACAACGTTAATATCCACGCCCTTACCGCAATGTCCCCACATGCTTCCATGCATGAAGATATTTG CAGTCTTGCTGAGGAAAAACATACGTCTCTTTTGGTCATACCGTTCCATAAGCTACCATCTAAGGACGGGAAATTAGAAGCTGAGGATAACACTTCATTT AGAGGTGTAAACCTCAATGTGTTGGCTAATGCGCCGTGCTCAGTTGGGATTTTTGTTGACAGAGGATTCGGGGTTTCCGAAAATGGAGAATCTAGTCTCA CTATGCGCCAGATACTCATGTTGTTCGTTGGAGGACCTGATGACCGTGAGGCTCTAGCATATGCATGGAGAATGGGAGGGACAGAAGGGATTGGTTTAAC AGTAGTGAGATTTCTTCCAGGAGATCAAGTAGAAGAAATTCAACCAAAAGACCTACTACCAGTTGGTGAGGCACACAAAATGTTAACATCCATTACATAT GTCGACAGTAACAGAAAACTAGACGATGAGTATGTGAACGAGTTCAGGCTTAAGACCGCAGGAGAACAATTTGTAAGTTATCAAGAGAAGGTAGTGAACA ACGACGAAGAGATAGTTTTAGCATTACAAGAAATGCATCACATATATGACCTCTATGTTGTTGGGAGAGGGGAAGGGATAGTCTCACCTCTCACAGAAAG CTTGGCAGATTGGTGCGAGTACCCAGAACTGGGGCCTATTGGGGATTTGCTAATTACATCAAGTTTTGCACAAGGCTCAGTTCTTGTGGTGCAACAATAT GTTGGTTCTAAAGATGGGATCAGTATAGCGGATATGTTATCAGCAGACAATTCGTCGCTTGGAAACCATCATTTCTCGAGCTGGGAGCACTCATCGCTGG AGGATGGTGGCTTGGAGATGGAGCCATTTGCACACCATAAAGGGAAAGAAGATGTAGATGCATAG
AA sequence Show only first row Show all	>Potri.004G131300.1 pacid=42794094 polypeptide=Potri.004G131300.1.p locus=Potri.004G131300 ID=Potri.004G131300.1.v4.1 annot-version=v4.1 MDLNELQNFYHVRNASNKPCFVVNITAEHGIWQSENPLTQSLPLLAMQLAATIFVTRAVYYLLRPLAVPRIVTDFLGGVLMGPSALSLFPKFRDMFPLRS IVTVETVAYWALCCHLFLIGLEFDMSVIENLTRTSKKAIHIAIAGVLIPFIMGIGLFFLMNQVPGGGYNPTGCVYVGLSLAVTGYPIVARVLNDVKLLHS DIGRMAMSASLVTDLISWILVIIGIAFSNQTSGGASVAVLSTVGFALFCIFVVRPALAIIISKTSKENDYSENYLCFVLVSISAFAVVTDVLGTNSIVGA FIFGFIMPNRILAAAFLDKFEEFVTGYLLPLFFTICGIRIDIWSLFDKKAHLAMGSVVVVLSCSAKILSTLLVSFYENVPARDGFSLGIVLNTKGILAIL ILQLGNSGEFLNKRDYTVMAIAILLMTGVVAPVTASIYRPAKHLSNYKRRTIQKGRQDGELRILACFQNFRNVSGMISLIDSSNATRESPLTVFALHVLE LTGRASAMLIVHSTGGKSSGYSRHGRKNSHSEKIVTALETYQTLNDNVNIHALTAMSPHASMHEDICSLAEEKHTSLLVIPFHKLPSKDGKLEAEDNTSF RGVNLNVLANAPCSVGIFVDRGFGVSENGESSLTMRQILMLFVGGPDDREALAYAWRMGGTEGIGLTVVRFLPGDQVEEIQPKDLLPVGEAHKMLTSITY VDSNRKLDDEYVNEFRLKTAGEQFVSYQEKVVNNDEEIVLALQEMHHIYDLYVVGRGEGIVSPLTESLADWCEYPELGPIGDLLITSSFAQGSVLVVQQY VGSKDGISIADMLSADNSSLGNHHFSSWEHSSLEDGGLEMEPFAHHKGKEDVDA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Potri.004G131300 [exp]	0	1
					Potri.005G240601 [exp]	16.00	0.5369
AT5G58610			PHD finger transcription facto...		Potri.009G072600 [exp]	49.59	0.5190
AT1G06137			unknown protein		Potri.001G380300 [exp]	72.86	0.4959
AT4G16447			unknown protein		Potri.011G086300 [exp]	92.07	0.4244
AT1G78720			SecY protein transport family ...		Potri.011G114200 [exp]	104.85	0.4779
AT5G58200			Calcineurin-like metallo-phosp...		Potri.018G111500 [exp]	107.10	0.4779
AT4G20040			Pectin lyase-like superfamily ...		Potri.003G075300 [exp]	126.96	0.4580
					Potri.001G174350 [exp]	161.86	0.4489
AT2G32835		RALFL16	RALF-like 16 (.1)		Potri.018G007800 [exp]	190.39	0.4249
					Potri.012G136500 [exp]	210.42	0.4251

Compare expression of checked genes

Potri.004G131300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.