Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-KAT1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46240 913 / 0 KAT1 potassium channel in Arabidopsis thaliana 1 (.1) AT4G18290 816 / 0 KAT2 potassium channel in Arabidopsis thaliana 2 (.1) AT2G26650 645 / 0 AKT1, ATAKT1 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) AT4G32500 613 / 0 AKT5 K+ transporter 5, K+ transporter 5, K+ transporter 5 (.1) AT2G25600 613 / 0 AKT6, SPIK Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) AT4G22200 562 / 0 AKT3, AKT2/3 potassium transport 2/3 (.1) AT4G32650 429 / 1e-141 AtLKT1, KAT3, ATKC1 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) AT3G02850 350 / 1e-108 SKOR STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) AT5G37500 330 / 4e-101 GORK gated outwardly-rectifying K+ channel, gated outwardly-rectifying K+ channel (.1) AT2G23980 77 / 2e-14 ATCNGC6 CYCLIC NUCLEOTIDE GATED CHANNEL 6, cyclic nucleotide-gated channel 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G071400 [exp] 635 / 0 AT2G26650 1192 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Potri.018G031600 [exp] 624 / 0 AT2G25600 1078 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Potri.006G249900 [exp] 606 / 0 AT2G25600 1065 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Potri.003G018800 [exp] 538 / 0 AT4G22200 1045 / 0.0 potassium transport 2/3 (.1) Potri.006G245000 [exp] 507 / 2e-171 AT4G32650 752 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.018G035500 [exp] 483 / 4e-162 AT4G32650 777 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.012G124944 [exp] 461 / 9e-154 AT4G32650 734 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.006G154600 [exp] 330 / 1e-103 AT2G26650 816 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Potri.004G083300 [exp] 328 / 4e-100 AT3G02850 1268 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042831 [exp] 1016 / 0 AT5G46240 825 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1) Lus10028128 [exp] 1007 / 0 AT5G46240 827 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1) Lus10043298 [exp] 616 / 0 AT2G26650 1250 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10019442 [exp] 615 / 0 AT2G26650 1252 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10033052 [exp] 598 / 0 AT2G26650 1211 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10002529 [exp] 594 / 0 AT2G25600 1030 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Lus10019944 [exp] 584 / 0 AT4G22200 1111 / 0.0 potassium transport 2/3 (.1) Lus10008082 [exp] 572 / 0 AT2G25600 994 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Lus10013115 [exp] 571 / 0 AT2G25600 1036 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Lus10015474 [exp] 552 / 0 AT4G22200 1093 / 0.0 potassium transport 2/3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF00027 [poplar] [flax] cNMP_binding Cyclic nucleotide-binding domain CL0030 [poplar] [flax] Ion_channel PF07885 [poplar] [flax] Ion_trans_2 Ion channel CL0030 [poplar] [flax] PF11834 [poplar] [flax] KHA KHA, dimerisation domain of potassium ion channel CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies)
Representative CDS sequence Show only first row Show all	>Potri.004G132200.1 pacid=42795520 polypeptide=Potri.004G132200.1.p locus=Potri.004G132200 ID=Potri.004G132200.1.v4.1 annot-version=v4.1 ATGGCATTTTCCAATGCCAAGAACTTCTTCCAACGCTTCTGTTCCGTAGAGGTTCATGTGGAGGGTGTTTCTCATGGCAGCTTCTTCTCGAGCGATCTCC TACCATCCCTGGGAGCCCGGATAAATCGGGCAACCAAACTTCGAAGATACATAATTTCCCCTTACAATTCCTGTTATAGGGCTTGGGAGATGTGGCTGGT TGTTCTAGTCGTTTACTCTGCCTGGATCTCTCCATTTGAATTTGCTTTCCTAACATCCAAGAAAGATGCCCTCTTCATCTTTGACAACGTTGTCAACGGT TTTTTTGCTGTTGATATTGTTCTCACCTTCTTCGTTGCGTGTCTAGATAGCCACTCTTACCTCCTTATCGACGACCCTAAGAAGATAGCAATAAGGTACA TATCAACGTGGTTTATTTTCGATGTCTGCTCGACAGCCCCATTTCAGTCTCTTAGTCTCCTGTTCAGAAATCACGGTAATGGACTTGGTTTTAACATCCT CAGCATGCTCAGACTTTGGCGTCTCAGACGAGTCAGTGCCTTGTTTGCAAGACTTGAGAAGGACATCAGGTTCAACTATTTTTGGACTCGGTGCACAAAA CTTGTTTCTGTAACCCTGTTTGCAGTACACTGTGCTGGATGCTTTAACTATTTGATTGCAGATAGATACCCTGATCCGAAGAGAACCTGGATCGGTGCAG TAAACCCAAATTTTAAAGAGGAGAGACTCTGGAATAGATACGTGACAGCAATGTACTGGTCTATTACCACATTAACCACAACTGGATATGGGGACCTGCA TGCTGAGAACCCCAGGGAGATGCTTTTTGACATTTTTTACATGCTGTTCAACTTGGGTTTGACCTCATACCTCATTGGAAACATGACAAACCTTGTAGTT CACTGGACCAGCCGCACAAGGAACTTTAGAGACACAGTCAGAGCTGCTTCAGAATTCGCTGCACGAAATCAGTTGCCTCCTCGCATACAGGAACAAATGT TGTCACACATATGCCTCAAGTTCAAAACGGAAGGGTTGAAGCAGCAAGAGACCTTAAATGGTCTGCCAAAAGCCATTCGTTCAAGCATTGCAGACTATCT CTTCCATCCTATTGCTCAAAGAGCTTATCTCTTCCAAGGGGTTTCTCAGGACTTCCTTTTCCAACTGGTTTCAGAAATGGAGGCTGAATATTTTCCACCC AAGGAGGATGTAATTCTGCAGAACGAAGCTCCTACAGATCTCTACATACTCGTCTCGGGAACAGTGGATTTGATATTGTATGTTGATGGACGTGAAAAGG TTATTGGGAAAGCAATAGCAGGAGACACGTTTGGCGAGGTTGGAGTTTTATGTTCCAGGCCGCAACCTTTCACAGTTAGAACCTTTGAGCTTTCTCAAAT ACTACGACTGAACGGAACTGCTCTCATGAGCACCATAAAAGCGAATCCAGAAGATGGGCGCGTCATAATGAATCATCTTTCCATGAAACTGCGGAGGCCA GAAAGCATGGATTCTGAATCCCAAAACAGAGAAGAATGGTGTTCTAAGAGAGGGTGTAAAGATCATCTGCACGGAGATCTATCAGTGAACAAAGCAAGAG AGACGGATTCCCAGGGATCAAAGGCTACAAGAAAGAGTGAATTAGGCAAAGGTTATGACTGTACCAGACATGAAGGGTTAGTAACAGCAGTTGAGGATAG CGAAACGGCTCTTCATGCTGCTGTTTGCGAGGGGCATATTGAAATGGTTAAGATTTTGCTTGAAGGAGGAACAAACATAAACAAACCAGATGCCAGAGGA TGGACCCCAAAAGCTCTAGCCGAACAGCAAGGAAATAAAAGCATACATGATCTCTTACTAAATTACGAAAATAGGAATATATTAAATGAACATAGAATAG ATTTTATCGAGTCAGAAACTGTAGGTGACACCAAGAATAATCAAGGGAAACATGAAGGAAACACTGGACCCAGTTTTCTCATCTCCCATTCAAACAAGGC GCTCACAAGCTCCAGCTCATGCATTTCTAGATGTCCCCATGATAGGGAAGCAAAGAAATCACCCAAGCGAGTCACTATCCACATGCAGCTTCAAAACAGA AGTACATTACAGAGCCGACCTGGGAAGTTAATTATCCTACCTGATTCTATGGAAGAGTTGCTGAGAATTGCCGGTGAAAAATTTGGAGGCTACAAATTTA CTAGAGTCATCAATGCTGAGAATGCAGAAATAGATGGTATCAGTGTCATTCGAGATGGCGATCATCTGTTTCTTCTCCAAGATGACTGA
AA sequence Show only first row Show all	>Potri.004G132200.1 pacid=42795520 polypeptide=Potri.004G132200.1.p locus=Potri.004G132200 ID=Potri.004G132200.1.v4.1 annot-version=v4.1 MAFSNAKNFFQRFCSVEVHVEGVSHGSFFSSDLLPSLGARINRATKLRRYIISPYNSCYRAWEMWLVVLVVYSAWISPFEFAFLTSKKDALFIFDNVVNG FFAVDIVLTFFVACLDSHSYLLIDDPKKIAIRYISTWFIFDVCSTAPFQSLSLLFRNHGNGLGFNILSMLRLWRLRRVSALFARLEKDIRFNYFWTRCTK LVSVTLFAVHCAGCFNYLIADRYPDPKRTWIGAVNPNFKEERLWNRYVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTSYLIGNMTNLVV HWTSRTRNFRDTVRAASEFAARNQLPPRIQEQMLSHICLKFKTEGLKQQETLNGLPKAIRSSIADYLFHPIAQRAYLFQGVSQDFLFQLVSEMEAEYFPP KEDVILQNEAPTDLYILVSGTVDLILYVDGREKVIGKAIAGDTFGEVGVLCSRPQPFTVRTFELSQILRLNGTALMSTIKANPEDGRVIMNHLSMKLRRP ESMDSESQNREEWCSKRGCKDHLHGDLSVNKARETDSQGSKATRKSELGKGYDCTRHEGLVTAVEDSETALHAAVCEGHIEMVKILLEGGTNINKPDARG WTPKALAEQQGNKSIHDLLLNYENRNILNEHRIDFIESETVGDTKNNQGKHEGNTGPSFLISHSNKALTSSSSCISRCPHDREAKKSPKRVTIHMQLQNR STLQSRPGKLIILPDSMEELLRIAGEKFGGYKFTRVINAENAEIDGISVIRDGDHLFLLQDD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G46240		KAT1	potassium channel in Arabidops...		Potri.004G132200 [exp]	0	1	Pt-KAT1.1
AT5G12860		DIT1	dicarboxylate transporter 1 (....		Potri.009G053800 [exp]	4.47	0.9297
AT5G40250			RING/U-box superfamily protein...		Potri.015G073600 [exp]	5.19	0.8944
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Potri.001G124200 [exp]	6.48	0.8966
AT5G25840			Protein of unknown function (D...		Potri.003G050200 [exp]	6.78	0.9180
AT5G20790			unknown protein		Potri.006G137700 [exp]	9.84	0.8069
AT5G16970		AT-AER	alkenal reductase (.1)		Potri.007G143700 [exp]	11.22	0.9143
AT1G19920		ASA1, APS2	ATP SULFURYLASE ARABIDOPSIS 1,...		Potri.005G237300 [exp]	13.11	0.9076
AT3G02380	CO	ATCOL2, COL2	CONSTANS-like 2 (.1)		Potri.017G107500 [exp]	13.85	0.8908
AT5G24850		CRY3	cryptochrome 3 (.1)		Potri.006G277500 [exp]	17.02	0.8934
AT5G12180		CPK17	calcium-dependent protein kina...		Potri.009G069200 [exp]	17.66	0.8971	CPK17.1

Compare expression of checked genes

Potri.004G132200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.