Plant FIBer expression Database

Potri.004G132300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G30000 932 / 0 MNS3 alpha-mannosidase 3 (.1)
AT1G51590 358 / 2e-116 MNS1, MANIB ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2)
AT3G21160 358 / 3e-116 MNS2, MANIA ALPHA-MANNOSIDASE IA, alpha-mannosidase 2 (.1)
AT5G43710 173 / 2e-46 Glycosyl hydrolase family 47 protein (.1)
AT1G27520 161 / 2e-42 Glycosyl hydrolase family 47 protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G141100
[exp]
363 / 4e-118 AT1G51590 813 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2)
Potri.008G007500
[exp]
358 / 2e-116 AT1G51590 885 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2)
Potri.008G160900
[exp]
169 / 4e-45 AT5G43710 908 / 0.0 Glycosyl hydrolase family 47 protein (.1)
Potri.012G076600
[exp]
154 / 2e-39 AT1G27520 657 / 0.0 Glycosyl hydrolase family 47 protein (.1)
Potri.015G071400
[exp]
111 / 2e-25 AT1G27520 931 / 0.0 Glycosyl hydrolase family 47 protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042830
[exp]
980 / 0 AT1G30000 846 / 0.0 alpha-mannosidase 3 (.1)
Lus10028127
[exp]
682 / 0 AT1G30000 622 / 0.0 alpha-mannosidase 3 (.1)
Lus10035727
[exp]
363 / 4e-118 AT1G51590 877 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2)
Lus10037312
[exp]
359 / 2e-116 AT1G51590 865 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2)
Lus10034820
[exp]
357 / 8e-116 AT1G51590 887 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2)
Lus10033368
[exp]
300 / 4e-93 AT1G51590 747 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2)
Lus10028126
[exp]
187 / 6e-56 AT1G30000 111 / 5e-29 alpha-mannosidase 3 (.1)
Lus10042143
[exp]
172 / 3e-46 AT1G27520 886 / 0.0 Glycosyl hydrolase family 47 protein (.1)
Lus10041170
[exp]
166 / 1e-43 AT5G43710 885 / 0.0 Glycosyl hydrolase family 47 protein (.1)
Lus10021888
[exp]
133 / 1e-32 AT5G43710 853 / 0.0 Glycosyl hydrolase family 47 protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0059 6_Hairpin PF01532 Glyco_hydro_47 Glycosyl hydrolase family 47
Representative CDS sequence
>Potri.004G132300.1 pacid=42796054 polypeptide=Potri.004G132300.1.p locus=Potri.004G132300 ID=Potri.004G132300.1.v4.1 annot-version=v4.1
ATGTCGAAATCGTTGCCTTATTCCATGAAAGATGTCCATTACGACAACGCCAAGTTCCGACAACGTTCATTCGTCAAGGTGATCACACAGTCCTTACTCA
CCAGTAACGCAAAGCATGATTGTTTAAGTTGCAGTACAGGAAAGTTTTTAGCATTATTAATGATCTTTGGCTTAGCATGTCTTATGTTCACGCATAAAAG
TACCCCCCATTCTGTTTCCCAAGGACAAGCTGAAGGAATAAAGGTGAATAAAGAAGTTAAGGGAATTTCAGATAGTGGAGGTAGATTCCAAAGATTTTGG
AGGAAACCACCAAGACTTCCTCCTCAACTACCGCCTGATGAAAAGGGTAGCATTGATAATCTTCCTCATGAACTGCAGAAGTTAAATACTGATTCAAAAT
GGGTGGATAGGCAACAAAGAGTGCAGAAGGCTTTCATCCATGCTTGGTCAGGCTATAAAATGTATGCAATGGGCTATGATGAACTTATGCCCCTGAGTCA
GCAAGGAGTTGATGGATTAGGAGGTCTAGGTGCTACTGTTGTTGATGCTCTTGATACTGCCTTGATAATGGGTGCCGATGAAGTTGTTTCTGAAGCAGGC
TTATGGATTGAAACACACCTTTCTGATAGGATTAGCAAGAAAGGCCAAGTAAATTTATTTGAAACTACTATTCGTGTCTTGGGTGGCCTCTTAAGTGCTT
ATCATTTAAGTGGAGGAGAGCAAGGGACAAATTTGACGCATAAGGGGCCTAAACCAACTGTCTATCTTGAAACTGCTAGAAATTTGGCTGATCGACTGCT
TTTGGCCTTTACTTCTAGCCCAACTTCTATTCCCTTTAGTGATGTTGTTCTGCATGATCCGTCAGCACATCGAGCTCCGGATGGATTGAGTAGTACTGCA
GAAGTTTCCACTGTGCAGCTTGAATTTAATTATCTCAGTACTGTTTCTGGCGATCCAAGGTACAGCATAGAAGCTATGAAGGTTTTGGAACATATAAAAG
ATCTTCCAAAGGTCGAAGGACTGGTTCCCATATACATAAGCCCTGACTCTGGTGAATTTAGTGGAGAAAATATTAGATTGGGATCTCGTGGTGACAGCTA
TTATGAGTACCTTATTAAAGTATGGCTCCAGCAAGGGAGAAATCGAGATAGTAATTTTACATATCTTTATGATATGTATGAGGAAGCAATGAAGGGTGTT
AGGCACCTACTTGTTCAGAAATCAATCCCCAATGGATTGGTTTTTGTCGGGGAATTGCCTTATGGACCTAAAGGTTCCTTTAGTCCAAAGATGGATCACC
TGGTCTGTTTCTTGCCAGGAACACTTGCTCTTGGTGCCACCAAGGGTCTCACAAAGGAGAAGGCAATGAAAGAAAACTTGCTCAAATTTGAGGACCTTGA
AAATTTGAAGCTTGCCGAAGATTTAGCCAAGACATGCTTTGAGATGTATTCAGTAACTTCTACTGGGCTTGCCCCAGAAATCGCTTACTTCCATACTGAG
GAATATTCAGAACATGGACTTGATGGTGGGAATAAGAATTCAAAGTTTGTCAATGACATAATAATTAAACATGCTGATCGTCACAATCTTTTGCGGCCTG
AAACTGTAGAATCACTGTTTATCTTGTATCGCATAACAGAAGACCCTAAATACCAGGAATGGGGTTGGCAGATCTTTGAAGCGTTTGAAAAGTACACGAA
GGTTGATTCTGGTGGATACAGTTCTTTAGAAGATGTTACTGTGCTTCCTCCTCGTAGAAGAGACAAGATGGAGACCTTCTTCTTGGGTGAGACACTCAAG
TATTTCTACTTGCTATTCGGGGATAGATCTGTTATTCCTTTGGATAAGTATGTCTTTAACACAGAAGCTCATCCCCTTCCTATTAAAGGCTCATGA
AA sequence
>Potri.004G132300.1 pacid=42796054 polypeptide=Potri.004G132300.1.p locus=Potri.004G132300 ID=Potri.004G132300.1.v4.1 annot-version=v4.1
MSKSLPYSMKDVHYDNAKFRQRSFVKVITQSLLTSNAKHDCLSCSTGKFLALLMIFGLACLMFTHKSTPHSVSQGQAEGIKVNKEVKGISDSGGRFQRFW
RKPPRLPPQLPPDEKGSIDNLPHELQKLNTDSKWVDRQQRVQKAFIHAWSGYKMYAMGYDELMPLSQQGVDGLGGLGATVVDALDTALIMGADEVVSEAG
LWIETHLSDRISKKGQVNLFETTIRVLGGLLSAYHLSGGEQGTNLTHKGPKPTVYLETARNLADRLLLAFTSSPTSIPFSDVVLHDPSAHRAPDGLSSTA
EVSTVQLEFNYLSTVSGDPRYSIEAMKVLEHIKDLPKVEGLVPIYISPDSGEFSGENIRLGSRGDSYYEYLIKVWLQQGRNRDSNFTYLYDMYEEAMKGV
RHLLVQKSIPNGLVFVGELPYGPKGSFSPKMDHLVCFLPGTLALGATKGLTKEKAMKENLLKFEDLENLKLAEDLAKTCFEMYSVTSTGLAPEIAYFHTE
EYSEHGLDGGNKNSKFVNDIIIKHADRHNLLRPETVESLFILYRITEDPKYQEWGWQIFEAFEKYTKVDSGGYSSLEDVTVLPPRRRDKMETFFLGETLK
YFYLLFGDRSVIPLDKYVFNTEAHPLPIKGS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G30000 MNS3 alpha-mannosidase 3 (.1) Potri.004G132300
[exp]
0 1
AT1G02500 METK1, AtSAM1, ... S-ADENOSYLMETHIONINE SYNTHETAS... Potri.010G153500
[exp]
14.17 0.7716 Pt-SAMS.3,AdoMet3
AT5G47420 Tryptophan RNA-binding attenua... Potri.003G078900
[exp]
40.62 0.6976
AT1G66810 C3HZnF AtC3H14 Zinc finger C-x8-C-x5-C-x3-H t... Potri.005G176900
[exp]
45.51 0.6914
AT3G25800 PP2AA2, PR65, P... protein phosphatase 2A subuni... Potri.010G127500
[exp]
47.11 0.7299 PDF1.3
AT5G49830 EXO84B exocyst complex component 84B ... Potri.010G249900
[exp]
53.57 0.7094
Potri.009G086900
[exp]
102.76 0.6506
AT3G23660 Sec23/Sec24 protein transport ... Potri.019G003100
[exp]
103.74 0.7081
AT2G26600 Glycosyl hydrolase superfamily... Potri.018G129500
[exp]
114.24 0.7025
AT4G14950 KMS1 Killing Me Slowly 1, SNARE ass... Potri.010G089600
[exp]
130.21 0.6801
AT4G32690 ATGLB3, GLB3 ARABIDOPSIS HEMOGLOBIN 3, hemo... Potri.006G244300
[exp]
130.44 0.6885 GLB3.1

Potri.004G132300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.