Plant FIBer expression Database

Potri.004G132400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G18335 38 / 0.0006 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.004G132400.1 pacid=42796185 polypeptide=Potri.004G132400.1.p locus=Potri.004G132400 ID=Potri.004G132400.1.v4.1 annot-version=v4.1
ATGGGTTTCAATCAAACCATCAAGTTCTTTTGCACCTTCCTTCTTTTCCTTCTCATCTCCATCGTTGCTTTCTCTTCCGCTTCTTCATGCCATATCGTAA
TCCAACCAAGTACTCCCGCAAAAGAACTAACCCAATACCAAGTGGTCTACATCAAGAACACTAATCCATTCATCTTGGACAAAGAACCCAACAAGAACCG
TAAAGAGAAGAGAAAGATGATGATGATGAAGAGGAGAAAGGAGATGATCAAGAACTTCAAAACCAGGTCTTTCTCTGCCATGCTTCCTAAGGGTTCTGTT
CCTCCTTCTGGCTCCTCTCCTTGTCACAATCAGAAACCCAACTCGAAAGTGACGTTTTTCTGCGATCTCTCAACCACTAAACCCTAA
AA sequence
>Potri.004G132400.1 pacid=42796185 polypeptide=Potri.004G132400.1.p locus=Potri.004G132400 ID=Potri.004G132400.1.v4.1 annot-version=v4.1
MGFNQTIKFFCTFLLFLLISIVAFSSASSCHIVIQPSTPAKELTQYQVVYIKNTNPFILDKEPNKNRKEKRKMMMMKRRKEMIKNFKTRSFSAMLPKGSV
PPSGSSPCHNQKPNSKVTFFCDLSTTKP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G18335 unknown protein Potri.004G132400
[exp]
0 1
AT1G30760 FAD-binding Berberine family p... Potri.011G161500
[exp]
5.65 0.9151
AT4G27730 ATOPT6 ARABIDOPSIS THALIANA OLIGOPEPT... Potri.012G019500
[exp]
6.16 0.9274
AT3G57450 unknown protein Potri.012G032500
[exp]
6.24 0.9228
Potri.019G062666
[exp]
7.93 0.8904
AT4G28850 ATXTH26, XTH26,... xyloglucan endotransglucosylas... Potri.006G160700
[exp]
10.58 0.8960
AT1G67330 Protein of unknown function (D... Potri.001G056300
[exp]
11.40 0.9059
AT5G60490 FLA12 FASCICLIN-like arabinogalactan... Potri.015G013300
[exp]
12.96 0.9033
AT1G64295 F-box associated ubiquitinatio... Potri.007G037500
[exp]
15.32 0.8061
Potri.012G022650
[exp]
15.42 0.8295
AT5G19580 glyoxal oxidase-related protei... Potri.006G160800
[exp]
15.49 0.8770

Potri.004G132400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.