Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46210 1211 / 0 CUL4, ATCUL4 cullin4 (.1) AT1G69670 490 / 1e-162 CUL3B, ATCUL3B ARABIDOPSIS THALIANA CULLIN 3B, cullin 3B (.1) AT1G26830 483 / 6e-160 CUL3A, ATCUL3A, ATCUL3 cullin 3A, cullin 3 (.1) AT4G02570 351 / 3e-109 AXR6, ATCUL1 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) AT1G02980 302 / 9e-91 ATCUL2, CUL2 cullin 2 (.1) AT1G43140 274 / 1e-80 Cullin family protein (.1) AT4G12100 172 / 2e-46 Cullin family protein (.1) AT3G46910 125 / 5e-32 Cullin family protein (.1) AT2G04660 68 / 2e-11 APC2 anaphase-promoting complex/cyclosome 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G084400 [exp] 1434 / 0 AT5G46210 1250 / 0.0 cullin4 (.1) Potri.010G093200 [exp] 487 / 2e-161 AT1G26830 1345 / 0.0 cullin 3A, cullin 3 (.1) Potri.008G148300 [exp] 485 / 1e-160 AT1G26830 1342 / 0.0 cullin 3A, cullin 3 (.1) Potri.003G115500 [exp] 365 / 1e-114 AT4G02570 1209 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.001G117200 [exp] 351 / 4e-109 AT4G02570 1226 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.008G217300 [exp] 337 / 5e-104 AT4G02570 1272 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.010G023800 [exp] 335 / 3e-103 AT4G02570 1265 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.008G089600 [exp] 57 / 3e-08 AT2G04660 1178 / 0.0 anaphase-promoting complex/cyclosome 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023306 [exp] 1095 / 0 AT5G46210 1077 / 0.0 cullin4 (.1) Lus10038504 [exp] 934 / 0 AT5G46210 913 / 0.0 cullin4 (.1) Lus10012835 [exp] 482 / 2e-159 AT1G26830 1320 / 0.0 cullin 3A, cullin 3 (.1) Lus10036739 [exp] 481 / 4e-159 AT1G26830 1335 / 0.0 cullin 3A, cullin 3 (.1) Lus10037188 [exp] 478 / 9e-158 AT1G26830 1328 / 0.0 cullin 3A, cullin 3 (.1) Lus10030485 [exp] 473 / 4e-156 AT1G26830 1317 / 0.0 cullin 3A, cullin 3 (.1) Lus10028917 [exp] 342 / 8e-106 AT4G02570 1290 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10024562 [exp] 341 / 3e-105 AT4G02570 1271 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10032200 [exp] 338 / 2e-104 AT4G02570 1269 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10004334 [exp] 332 / 8e-102 AT4G02570 1279 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00888 [poplar] [flax] Cullin Cullin family CL0123 [poplar] [flax] HTH PF10557 [poplar] [flax] Cullin_Nedd8 Cullin protein neddylation domain
Representative CDS sequence Show only first row Show all	>Potri.004G132900.2 pacid=42793922 polypeptide=Potri.004G132900.2.p locus=Potri.004G132900 ID=Potri.004G132900.2.v4.1 annot-version=v4.1 ATGTCTCTCCCCACCAAACGCTCAGCCACAACCAGCGCCAGCACTAGCACAGCCAGCACTTCCGCCTCAAATAGTTTCCTTCCAATGAAGAAGGCCAAGT CCCAGGCCGCCTCCGCCTGTTCTCCTCTCGACCACAACAAAAACGGCCTCTATCACTCTGACGATGTCGTCTTCGATCCTTCTTCCATGTCTCTCGACGA CGATCTCAAGCTCGTCGACTACCGCACTCCTCCCGCCGCTGCTAATTTATCTCGCAAAAAAGCCACCCCTCCACAACCCGCTAAAAAGCTCGTAATTAAG CTCGTCAAGGCTAAACCAACTCTGCCTACAAATTTTGAGGAGGACACATGGGCAAAGCTGCAGTCAGCTATTAAGGCTATATTCTTGAAACAACCAGCTC TTTGTGACTTGGAGAAACTTTATCAAGCTGTCAATGATCTTTGTCTGCATAAGATGGGGGGAAATCTCTATCTGCGTATTGAAAAAGAGTGTGAAACACA TATATCTGCAGCATTACAATCCTTAGTTGGTCAAAGCCCGGATTTGGTGGTCTTCTTAAAGCTTGTTGAGGAGTGCTGGCATGATCTCTGTGACCAGATG TTGATGATTCGTAGTATAGCCTTGTATCTGGACAGAACATATGTGAAACAAACTCCAAATGCACGTTCATTGTGGGACATGGGTTTGCAGCTTTTCCGAA AACATCTTTCTTTGTCTCCTGAAGTTGAGCACAAAACTGTCACCGGCCTCTTGCAAATGATTGAGAGGGAAAGATTAGGTGAAACAGTTAATAGGAAACC CCTTGGCCATCTTTTGAAGATGTTCACTTCACTAGGAATTTATGCAGAAAGTTTTGAAAGACCATTCCTTGAGTGCACATCTGAATTTTATGCTGCCGAA GGCATGACATACATGCAGCAATCAGATGTTCCGGATTACTTGAAGCATGTGGAGGTGCCTTTTGTTTCTCCTCTGATATTATTCGGGATTAAATCGAGAT TGAATGAAGAACAAGATCGATGCAAGATTTACCTTGATTCAAGCACTAAAAAGCCACTAATAGCAACTGCAGAAAGACAGCTACTTGAACGCCATATATC TGCTATTCTTGATAAGGGGTTCATGATGCTTATGAATGGACATCGGATTGAGGACCTTAAGAGGATCTACTCACTTTTCTTAAGGGTCAATGCCCTTGAA TCATTAAGGCAGGCCCTTAGCATGTACATCCGAAGAACCGGGCAGGGCATTGTCATGGATGAAGAGAAAGACAAAGATATGGTTTCCTCCTTGTTAGAGT TTAAGGCTTGTCTTGATTCAATATGGGAAGAAAGCTTCTCCAAGAATGAAGGATTTTGCATCACCGTAAAGGATGCATACGAGCATTTAATTAATCTTCG TCAGAACCATCCTGCTGAGCTGATAGCAAAATTTTTGGATGAGAAGCTTCGTGCTGGGAATAAGGGTACTTCCGAGGAGGAGTTGGAGGGTACACTTGAA AAAGTTTTGGTTTTATTCAGGTTTATTCAGGGTAAGGATGTGTTTGAAGCATTTTATAAGAAGGATCTTGCAAAAAGACTGCTGTTGGGAAAAAGTGCTT CTATTGATGCAGAGAAATCTATGATATCTAAGCTGAAGACTGAATGTGGCAGCCAGTTTACAAACAAGCTTGAAGGAATGTTTAAGGATATTGAACTGTC AAAGGAGATAAACGAGTCCTTTAAACAATCATCTCAGGCCAGGACTAAACTTCCATCAGGAATTGAAATGAGTGTACATGTCTTAACTACTGGGTACTGG CCCACATATCCACCCATGGATGTTAGGCTTCCTCATGAGCTGAACGTTTATCAGGATATATTCAAAGAATTCTACTTAAGCAAGTATAGTGGAAGACGCT TAATGTGGCAAAATTCATTGGGTCATTGTGTGTTGAAAGCTGAGTTTCCGAAAGGTAAAAAGGAGCTGGCAGTTTCTCTATTTCAGACTGTTGTTCTGAT GCTGTTTAATGATGCCCAAAAGCTTAGTTTTCAAGATATCAAAGACTCTACTGGCATAGAAGACAAGGAACTTAGAAGGACTTTGCAGTCTCTGGCGTGT GGAAAAGTTCGTGTCCTGCTGAAGCTGCCCAAAGGGAGGGATGTGGAGGATGATGATTCCTTTGTGTTCAATGAAGGATTTGCTGCTCCACTCTATCGAA TAAAGGTAAATGCGATCCAGATGAAGGAAACTGTAGAGGAGAACACAAGCACCACTGAGAGAGTATTTCAGGATCGTCAATACCAGGTTGATGCCGCGAT TGTCCGGATAATGAAGACAAGGAAGGTGCTAAGTCACACACTTCTTATAACTGAACTATTCCAGCAGCTGAAGTTTCCTATAAAGCCAGCTGATTTGAAG AAAAGGATAGAAAGCCTTATCGACAGGGATTACCTTGAGCGAGACAAGAGCAATCCTCAGATATACAATTACTTGGCCTAA
AA sequence Show only first row Show all	>Potri.004G132900.2 pacid=42793922 polypeptide=Potri.004G132900.2.p locus=Potri.004G132900 ID=Potri.004G132900.2.v4.1 annot-version=v4.1 MSLPTKRSATTSASTSTASTSASNSFLPMKKAKSQAASACSPLDHNKNGLYHSDDVVFDPSSMSLDDDLKLVDYRTPPAAANLSRKKATPPQPAKKLVIK LVKAKPTLPTNFEEDTWAKLQSAIKAIFLKQPALCDLEKLYQAVNDLCLHKMGGNLYLRIEKECETHISAALQSLVGQSPDLVVFLKLVEECWHDLCDQM LMIRSIALYLDRTYVKQTPNARSLWDMGLQLFRKHLSLSPEVEHKTVTGLLQMIERERLGETVNRKPLGHLLKMFTSLGIYAESFERPFLECTSEFYAAE GMTYMQQSDVPDYLKHVEVPFVSPLILFGIKSRLNEEQDRCKIYLDSSTKKPLIATAERQLLERHISAILDKGFMMLMNGHRIEDLKRIYSLFLRVNALE SLRQALSMYIRRTGQGIVMDEEKDKDMVSSLLEFKACLDSIWEESFSKNEGFCITVKDAYEHLINLRQNHPAELIAKFLDEKLRAGNKGTSEEELEGTLE KVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYW PTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKDSTGIEDKELRRTLQSLAC GKVRVLLKLPKGRDVEDDDSFVFNEGFAAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLK KRIESLIDRDYLERDKSNPQIYNYLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G46210		CUL4, ATCUL4	cullin4 (.1)		Potri.004G132900 [exp]	0	1
AT3G01150		ATPTB1, PTB	polypyrimidine tract-binding p...		Potri.017G085400 [exp]	2.23	0.7388
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Potri.005G028800 [exp]	10.58	0.6249	SNF4.3
AT3G10330			Cyclin-like family protein (.1...		Potri.006G048400 [exp]	12.96	0.6283	TFIIB1.2
AT1G07470			Transcription factor IIA, alph...		Potri.009G036700 [exp]	18.73	0.5849
AT2G30110		ATUBA1, MOS5	MODIFIER OF SNC1 5, ubiquitin-...		Potri.009G075700 [exp]	20.00	0.5956
AT5G46210		CUL4, ATCUL4	cullin4 (.1)		Potri.011G084400 [exp]	20.59	0.6494
AT3G58560			DNAse I-like superfamily prote...		Potri.006G195600 [exp]	21.44	0.6959
AT1G49980			DNA/RNA polymerases superfamil...		Potri.001G293600 [exp]	24.73	0.5225
AT2G36960	MYB	TKI1	TSL-kinase interacting protein...		Potri.016G091700 [exp]	26.32	0.5700	Pt-TKI1.1
AT3G61600		ATPOB1	POZ/BTB containin G-protein 1 ...		Potri.003G135300 [exp]	28.56	0.5764

Compare expression of checked genes

Potri.004G132900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.