Plant FIBer expression Database

Potri.004G133001 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G21280 46 / 6e-06 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G109250
[exp]
444 / 7e-161 AT1G21280 52 / 6e-08 unknown protein
Potri.013G133550
[exp]
63 / 8e-12 ND /
Potri.004G127101
[exp]
59 / 3e-10 AT1G21280 75 / 8e-16 unknown protein
Potri.013G092801
[exp]
59 / 5e-10 AT1G21280 76 / 7e-16 unknown protein
Potri.001G247404
[exp]
56 / 6e-09 AT1G21280 84 / 2e-18 unknown protein
Potri.013G016350
[exp]
48 / 2e-06 AT1G21280 56 / 2e-08 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035477
[exp]
39 / 0.0003 AT1G75560 49 / 2e-08 zinc knuckle (CCHC-type) family protein (.1), zinc knuckle (CCHC-type) family protein (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0511 Retroviral_zf PF00098 zf-CCHC Zinc knuckle
Representative CDS sequence
>Potri.004G133001.1 pacid=42795546 polypeptide=Potri.004G133001.1.p locus=Potri.004G133001 ID=Potri.004G133001.1.v4.1 annot-version=v4.1
ATGTGGGAATATCTGAAGAAGGTTTACTATCAAGATAATAATGCTAGACGTTTTCAATTAGAAAACGACATCTCTAATTATTCTCAAAGCAATCTTCCTA
TTCAGGAGTATTATTCTGGTTTTCAGAACCTATGGGCAGAATATACTGATATCATTTATGCCCAGATTCCAGCAGAATCCCTCTCGGTTATTCAGAAGGT
GCATGAGCAGAGCAAGTGTGATCAATTTCTCATGAAATTGAGATCTGAATTTGAGATTACTCGCTCGAATTTGATGAACCGAGCTCCCTTGCCTTCCTTG
GATGGTTGTTTTGGGGAATTACTGCGGGAAGAACAGCGAATCCTTACACAAAGTACTCTAAAGCAGGACAACCCAGCTGCAGTTGCCTTTGCTGCCCAGG
GAAGAGGTAGAGGCTGGAATATGGGCAATGTTCAGTGTTATAGCTGCAAGGAATATGGCCACATTGCTAACAATTGTAGAAAGAAGTTCTGCAATTATTG
CAAACAGCAAGGGCATATTATCAAGGAGTGTCCCACTCGTCCTCAAAACCAGAAAATACAGACCTTTCCAGCGGTGGTATCTGAAAGCTCATCTGTGACA
GTCGCTACCAGTTCTCTTACTCCAGAAATGGTGCAGCAAATGATCATTACAGCCCTCTCGGCCCTAGGGCTACAAGGATCAGGTGTCGGGGAAAGTAATC
GCGAAGGGGCCTAA
AA sequence
>Potri.004G133001.1 pacid=42795546 polypeptide=Potri.004G133001.1.p locus=Potri.004G133001 ID=Potri.004G133001.1.v4.1 annot-version=v4.1
MWEYLKKVYYQDNNARRFQLENDISNYSQSNLPIQEYYSGFQNLWAEYTDIIYAQIPAESLSVIQKVHEQSKCDQFLMKLRSEFEITRSNLMNRAPLPSL
DGCFGELLREEQRILTQSTLKQDNPAAVAFAAQGRGRGWNMGNVQCYSCKEYGHIANNCRKKFCNYCKQQGHIIKECPTRPQNQKIQTFPAVVSESSSVT
VATSSLTPEMVQQMIITALSALGLQGSGVGESNREGA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G21280 unknown protein Potri.004G133001
[exp]
0 1
AT1G21280 unknown protein Potri.006G109250
[exp]
1.00 0.9524
AT3G54230 SUA suppressor of abi3-5 (.1.2) Potri.017G138401
[exp]
3.74 0.9459
AT3G14172 unknown protein Potri.003G070400
[exp]
6.32 0.9140
Potri.003G104800
[exp]
8.00 0.9286
AT5G57690 ATDGK4 diacylglycerol kinase 4 (.1) Potri.006G172400
[exp]
10.39 0.8754
AT5G40645 RPM1-interacting protein 4 (RI... Potri.001G338500
[exp]
11.48 0.9128
AT1G28510 Optic atrophy 3 protein (OPA3)... Potri.013G123000
[exp]
13.07 0.9151
AT1G22970 unknown protein Potri.010G117100
[exp]
16.12 0.9057
AT5G65960 GTP binding (.1) Potri.002G177100
[exp]
16.97 0.9074
AT1G64870 unknown protein Potri.006G252800
[exp]
17.14 0.8951

Potri.004G133001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.