Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30220 328 / 2e-110 ATINT2 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) AT2G35740 236 / 1e-74 ATINT3 nositol transporter 3 (.1) AT4G16480 233 / 2e-73 ATINT4 inositol transporter 4 (.1) AT2G43330 113 / 4e-29 ATINT1 inositol transporter 1 (.1) AT3G05150 58 / 9e-10 Major facilitator superfamily protein (.1) AT2G48020 57 / 1e-09 Major facilitator superfamily protein (.1.2) AT2G18480 56 / 4e-09 AtPLT3 Major facilitator superfamily protein (.1) AT2G20780 53 / 3e-08 AtPLT4 Major facilitator superfamily protein (.1) AT4G36670 52 / 7e-08 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) AT4G35300 50 / 3e-07 TMT2 tonoplast monosaccharide transporter2 (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G010600 [exp] 239 / 7e-76 AT4G16480 825 / 0.0 inositol transporter 4 (.1) Potri.006G015300 [exp] 233 / 2e-73 AT4G16480 788 / 0.0 inositol transporter 4 (.1) Potri.006G015200 [exp] 230 / 1e-72 AT4G16480 811 / 0.0 inositol transporter 4 (.1) Potri.007G126800 [exp] 116 / 3e-30 AT2G43330 710 / 0.0 inositol transporter 1 (.1) Potri.017G032400 [exp] 107 / 6e-29 AT2G43330 272 / 8e-90 inositol transporter 1 (.1) Potri.017G032200 [exp] 112 / 1e-28 AT2G43330 743 / 0.0 inositol transporter 1 (.1) Potri.017G032600 [exp] 90 / 3e-22 AT2G43330 0 / 1 inositol transporter 1 (.1) Potri.007G024300 [exp] 58 / 9e-10 AT1G75220 702 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1) Potri.002G212900 [exp] 57 / 2e-09 AT2G48020 723 / 0.0 Major facilitator superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028118 [exp] 363 / 3e-124 AT1G30220 893 / 0.0 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Lus10042820 [exp] 363 / 3e-124 AT1G30220 890 / 0.0 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Lus10010500 [exp] 241 / 2e-76 AT4G16480 823 / 0.0 inositol transporter 4 (.1) Lus10017561 [exp] 233 / 1e-73 AT4G16480 820 / 0.0 inositol transporter 4 (.1) Lus10017559 [exp] 229 / 2e-72 AT2G35740 669 / 0.0 nositol transporter 3 (.1) Lus10039050 [exp] 217 / 2e-67 AT4G16480 769 / 0.0 inositol transporter 4 (.1) Lus10010501 [exp] 213 / 9e-66 AT4G16480 755 / 0.0 inositol transporter 4 (.1) Lus10038808 [exp] 193 / 3e-58 AT4G16480 760 / 0.0 inositol transporter 4 (.1) Lus10000534 [exp] 117 / 5e-33 AT4G16480 187 / 4e-57 inositol transporter 4 (.1) Lus10025565 [exp] 109 / 1e-27 AT2G43330 768 / 0.0 inositol transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00083 [poplar] [flax] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Potri.004G133420.1 pacid=42794253 polypeptide=Potri.004G133420.1.p locus=Potri.004G133420 ID=Potri.004G133420.1.v4.1 annot-version=v4.1 ATGGTTCAGTTGGCTGGTTTTGCTTCTAACCAAACTGCACTCCTCCTCTCACTTGTCACTGCTGGGTTCAATGCCTTGGGCTCTATTGTGAGCATATACT TCATTGACAGGACAGGAAGGAAGAAACTCCTAATCATCAGTTTGTTTGGTGTCGTAATCTCTCTTGGACTTCTATCAGGAATTTTCCGTGAGACTACAAC TCACTCACCGATCGTTATAGCAACTGAATCAAGCTTTGCTGCCTACACCTGCCCAGATTACAGTTCAGTCACAAATGCTGCTGGTTGGGACTGCATGAAG TGTTTGAAGGCTTCACATCCAGATTGTGGGTTCTGTTCTTCAGCTTCTGATAAGCTACTGCCAGGATCATGTTTGATCTCAAATAGCACAGTCCGTAAGA GCCATAGGGAATGGTACACAAGAGGATGTCCAAGCAAATACGGATGGGTTGCACTAATTGGCCTGACACTCTACATCATATTCTTCTCTCCAGGAATGGG TACTGTCCCATGGATTGTCAATTCTGAGATCTACCCTTTGAGGTTTAGAGGGGTCTGTGGAGGAATAGCTGCCACTGCAAACTGGATCTCAAACCTCATC GTTGCCCAGTCCTTCCTGTCCTTAACACAAGCAATTGGGACATCCTGGGCATTGTAA
AA sequence Show only first row Show all	>Potri.004G133420.1 pacid=42794253 polypeptide=Potri.004G133420.1.p locus=Potri.004G133420 ID=Potri.004G133420.1.v4.1 annot-version=v4.1 MVQLAGFASNQTALLLSLVTAGFNALGSIVSIYFIDRTGRKKLLIISLFGVVISLGLLSGIFRETTTHSPIVIATESSFAAYTCPDYSSVTNAAGWDCMK CLKASHPDCGFCSSASDKLLPGSCLISNSTVRKSHREWYTRGCPSKYGWVALIGLTLYIIFFSPGMGTVPWIVNSEIYPLRFRGVCGGIAATANWISNLI VAQSFLSLTQAIGTSWAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G30220		ATINT2	ARABIDOPSIS THALIANA INOSITOL ...		Potri.004G133420 [exp]	0	1
AT5G05550	Trihelix		sequence-specific DNA binding ...		Potri.008G071300 [exp]	1.00	0.8588
AT1G20160		ATSBT5.2	Subtilisin-like serine endopep...		Potri.002G018600 [exp]	6.00	0.8232	Pt-SSTP.2
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Potri.001G437700 [exp]	7.48	0.7897
AT5G10530			Concanavalin A-like lectin pro...		Potri.001G283200 [exp]	9.16	0.8337
					Potri.001G382300 [exp]	11.31	0.7872
					Potri.003G025032 [exp]	11.48	0.7702
AT5G10530			Concanavalin A-like lectin pro...		Potri.001G262866 [exp]	12.48	0.7979
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Potri.006G192000 [exp]	14.07	0.7737
AT1G04270		RPS15	cytosolic ribosomal protein S1...		Potri.005G055401 [exp]	17.66	0.7815
AT2G30080		ATZIP6, ZIP6	ZIP metal ion transporter fami...		Potri.009G074100 [exp]	19.36	0.7777	ZIP6.2

Compare expression of checked genes

Potri.004G133420 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.