Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08430 405 / 3e-135 SWIB/MDM2 domain;Plus-3;GYF (.1) AT5G23480 261 / 2e-79 SWIB/MDM2 domain;Plus-3;GYF (.1) AT5G63700 238 / 3e-70 zinc ion binding;DNA binding (.1) AT3G51120 120 / 5e-28 DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (.1) AT2G16485 115 / 2e-26 nucleic acid binding;zinc ion binding;DNA binding (.1) AT2G18090 62 / 9e-10 PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein (.1) AT3G19080 45 / 0.0001 SWIB complex BAF60b domain-containing protein (.1) AT1G49520 44 / 0.0002 SWIB complex BAF60b domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G078050 [exp] 320 / 2e-98 AT5G63700 368 / 3e-116 zinc ion binding;DNA binding (.1) Potri.001G305900 [exp] 274 / 2e-84 AT5G63700 406 / 2e-135 zinc ion binding;DNA binding (.1) Potri.005G117300 [exp] 192 / 1e-51 AT2G16485 695 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Potri.007G016000 [exp] 189 / 8e-51 AT2G16485 709 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Potri.004G161700 [exp] 145 / 3e-36 AT2G16485 1050 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Potri.009G123800 [exp] 144 / 1e-35 AT2G16485 1064 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Potri.001G297400 [exp] 46 / 1e-05 AT2G14880 142 / 3e-44 SWIB/MDM2 domain superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020897 [exp] 226 / 6e-67 AT5G08430 228 / 4e-68 SWIB/MDM2 domain;Plus-3;GYF (.1) Lus10018078 [exp] 142 / 4e-35 AT2G16485 986 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Lus10025973 [exp] 136 / 3e-33 AT3G51120 487 / 2e-148 DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (.1) Lus10014271 [exp] 136 / 3e-33 AT3G51120 644 / 0.0 DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (.1) Lus10042072 [exp] 130 / 4e-31 AT2G16485 1007 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Lus10014272 [exp] 56 / 1e-07 AT3G51120 391 / 7e-120 DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (.1) Lus10025974 [exp] 54 / 3e-07 AT3G51120 395 / 3e-120 DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (.1) Lus10009333 [exp] 44 / 0.0004 AT3G19080 266 / 4e-87 SWIB complex BAF60b domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0673 [poplar] [flax] GYF PF02213 [poplar] [flax] GYF GYF domain
Representative CDS sequence Show only first row Show all	>Potri.004G133600.7 pacid=42795838 polypeptide=Potri.004G133600.7.p locus=Potri.004G133600 ID=Potri.004G133600.7.v4.1 annot-version=v4.1 ATGGATGCCTTTTCTGTCTTCACTGTATTATCATTATTATCACCAATTATTGTTATCTATTCTGCCTGCATGCAGCTGCAGTCTACCAGTGAAGGAGGGG AGGGAGTGATTATTATTATCAATAAAAGAAAAAAAATGGGTGATTTTGTTTGGATGGAAGAATATACAGATGGCCCCCCACTGTTTGCTCCCCCTTCAAC CTCCAAAAGAAAGGCTCGAACGCCTAGGAAACTGGAATTTACTGGATGGGGCTCCACTCTCCTCATTGCATTCCTTCAATCTATTGGTACAGGTACCACC AATCAGATTTCTCAGTACGATGTTACTGCCATCATTAACAAGTATGTCAACGACCGCAACCTCCTCCACCCCACAAAAAAGAAGAGGGTTCTTTGCGATG AATGGCTTCTTCCTCTTTTTGGAAGGAAGACCATCAATCGAATCCGAATCTATGACCTCCTCGAACCCCATTTTGCTGAAAACAAAGTTGGTTCTGATGA TGATTTCTTTGATACTACGGATGATGACGAGGATAATAATGCCTACCAACGCCACAAGTGTTCAGCCTCGGATAGAAAATGTCATTCTAAGAAAAGGGTT TTTGAAGCTCCCAAGAGCTGTTTTGCTGCTATTGTTCCTGATAACATTAAGCTTGTTTATTTGAAGAGGCTTTTGGTTCAGGATCTTGCCAAGAACAACC CCGAAACATTTCAAAGCAAAATTGTTGGAAGCTTTGTGAGAATCAAGTCTGATCCTAATGATTACCTCCAGAAAAACTCTCACATGCTCGTGCAGGTCAC TGGTTTAGTGGAGTCTTCCAGAGCTAATGGTATTAACACTGAAATGCTTCTTGAAGTTTCAAATTATATGAAAGATGTCCGCATATCTATGCTTTCAGAT GATAACTTTTCTAAGGAAGAATGTGAAGATCTGAATCAGAGAGTAAGAGATGGTTCACTCAAGAGGCCAACTATTGTCGAGCTTGAAGAGAAGGCCCAAG TTTTGCATGAAGATATAACAAAGCATTGGCTTCGTGGAGAACTTGCTTTTCTTCAAAAGCTCATTGATCGGGCAAATGAAAAGGGTTGGCGTAGAGAATT GTTTGATTACTTGGAAAGAAAGAAGCTGCTTGAGACTCCTGATGAACAGACACGGCTATTGCTTGACATTCCAAAAGTCATAGCCGATGAAATAGAAGAC GAGCCTGCACCAGAGGATTTTCCAGTGAATATAAAACAAGGAAATGATGGTTCACCAAAATCATCTCTGGATGGAGTTCTGGAAATTCCCAATTCTGATG TAGCTTCAAATAAAACTTCGACTTGGATTTCTTTCAGCAAGAATTCTGCAGGAAACCAAGCTGTCCTGGCAACACCAAAACAGAGCAACAGAATGGATCA TCAGCATTTTGTTGAAGATCAGCCAAAGCAATTAACAAACATCATCGGGGAGAGCAACGATGAAATGCTGCCTGTCAACATAGAAGATAACAAGCACCGT CAATGCTCGATGGACGTGCTGGTGATTGATTTGAGCGACAGTGAAGAAGATGAAGGCCCGAGGCATAGAGATAATGTTCAGATTATTGATTGTGATCCGG GAAGTTTTTTGTGGCATTATTTAGATCCCCAAGGAGATGTACAAGGTCCCTTCTCTTTGACATTATTAAAACGTTGGAATGATGCTGACTACTTTCTTCC AGGGTTCAAGGTTTGGAAGACAGGACAGAGCCAAAACGAAGCAGTATTATTGAGTGATGTTCTTCGCAGTATTATTGAGTGA
AA sequence Show only first row Show all	>Potri.004G133600.7 pacid=42795838 polypeptide=Potri.004G133600.7.p locus=Potri.004G133600 ID=Potri.004G133600.7.v4.1 annot-version=v4.1 MDAFSVFTVLSLLSPIIVIYSACMQLQSTSEGGEGVIIIINKRKKMGDFVWMEEYTDGPPLFAPPSTSKRKARTPRKLEFTGWGSTLLIAFLQSIGTGTT NQISQYDVTAIINKYVNDRNLLHPTKKKRVLCDEWLLPLFGRKTINRIRIYDLLEPHFAENKVGSDDDFFDTTDDDEDNNAYQRHKCSASDRKCHSKKRV FEAPKSCFAAIVPDNIKLVYLKRLLVQDLAKNNPETFQSKIVGSFVRIKSDPNDYLQKNSHMLVQVTGLVESSRANGINTEMLLEVSNYMKDVRISMLSD DNFSKEECEDLNQRVRDGSLKRPTIVELEEKAQVLHEDITKHWLRGELAFLQKLIDRANEKGWRRELFDYLERKKLLETPDEQTRLLLDIPKVIADEIED EPAPEDFPVNIKQGNDGSPKSSLDGVLEIPNSDVASNKTSTWISFSKNSAGNQAVLATPKQSNRMDHQHFVEDQPKQLTNIIGESNDEMLPVNIEDNKHR QCSMDVLVIDLSDSEEDEGPRHRDNVQIIDCDPGSFLWHYLDPQGDVQGPFSLTLLKRWNDADYFLPGFKVWKTGQSQNEAVLLSDVLRSIIE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G08430			SWIB/MDM2 domain;Plus-3;GYF (....		Potri.004G133600 [exp]	0	1
AT3G18770			Autophagy-related protein 13 (...		Potri.019G010700 [exp]	3.46	0.8623
					Potri.002G115501 [exp]	3.60	0.8670
AT1G68130	C2H2ZnF	IDD14beta, IDD1...	indeterminate(ID)-domain 14 (....		Potri.008G140400 [exp]	5.65	0.8452
AT1G28260			Telomerase activating protein ...		Potri.011G053800 [exp]	6.40	0.7998
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Potri.002G119900 [exp]	12.72	0.8507
AT1G14650			SWAP (Suppressor-of-White-APri...		Potri.007G070700 [exp]	12.80	0.8579
AT1G45332			Translation elongation factor ...		Potri.003G109900 [exp]	17.54	0.8228
AT2G46020		CHA2, ATBRM, CH...	CHROMATIN REMODELING 2, ARABID...		Potri.014G086500 [exp]	17.88	0.8348
AT3G20730			Tetratricopeptide repeat (TPR)...		Potri.007G068900 [exp]	19.89	0.8261
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Potri.007G046200 [exp]	20.78	0.8119	AP2.15,RAP2

Compare expression of checked genes

Potri.004G133600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.