Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26360 1028 / 0 TCP-1/cpn60 chaperonin family protein (.1) AT1G24510 291 / 2e-91 TCP-1/cpn60 chaperonin family protein (.1.2) AT3G11830 288 / 2e-90 TCP-1/cpn60 chaperonin family protein (.1.2) AT3G18190 264 / 3e-81 TCP-1/cpn60 chaperonin family protein (.1) AT3G20050 238 / 2e-71 ATTCP-1 T-complex protein 1 alpha subunit (.1) AT3G03960 213 / 5e-62 TCP-1/cpn60 chaperonin family protein (.1) AT5G20890 211 / 3e-61 TCP-1/cpn60 chaperonin family protein (.1) AT3G02530 204 / 9e-59 TCP-1/cpn60 chaperonin family protein (.1) AT5G16070 201 / 1e-57 TCP-1/cpn60 chaperonin family protein (.1) AT4G33240 97 / 9e-21 FAB1A FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G138200 [exp] 1113 / 0 AT5G26360 1029 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.T046300 [exp] 1113 / 0 AT5G26360 1030 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.004G195300 [exp] 295 / 5e-93 AT3G11830 985 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.010G051700 [exp] 286 / 1e-89 AT1G24510 989 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.009G157400 [exp] 280 / 5e-87 AT3G11830 929 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.008G182300 [exp] 279 / 5e-87 AT1G24510 1014 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.012G051300 [exp] 271 / 7e-84 AT3G18190 942 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.015G042600 [exp] 267 / 2e-82 AT3G18190 922 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.014G058500 [exp] 243 / 3e-73 AT3G20050 1006 / 0.0 T-complex protein 1 alpha subunit (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021150 [exp] 1050 / 0 AT5G26360 1046 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10017853 [exp] 1049 / 0 AT5G26360 1041 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10034682 [exp] 1024 / 0 AT5G26360 1016 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10040514 [exp] 978 / 0 AT5G26360 996 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10006457 [exp] 291 / 1e-91 AT1G24510 1009 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10011401 [exp] 291 / 2e-91 AT1G24510 1012 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10036947 [exp] 283 / 2e-88 AT1G24510 1004 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10008406 [exp] 281 / 2e-87 AT3G11830 1011 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10026773 [exp] 253 / 5e-77 AT3G11830 920 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10008670 [exp] 246 / 2e-74 AT3G18190 967 / 0.0 TCP-1/cpn60 chaperonin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00118 [poplar] [flax] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Potri.004G133800.1 pacid=42795241 polypeptide=Potri.004G133800.1.p locus=Potri.004G133800 ID=Potri.004G133800.1.v4.1 annot-version=v4.1 ATGCACGCTCCAGTTCTCGTTCTCAGGGATTCGTTGAAACGAGAATCAGGAACGAAGGTACATCATGCCAACATACAGGCTGCAAAGGCAGTTGCCGATA TCATCAGGACCACCTTAGGTCCGCGGTCCATGTTGAAGATGCTTCTCGATGCCAGCGGTGGTATTGTTGTTACCAACGACGGCAATGCAATCCTCCGTGA GTTAGATCTGGCTCATCCTGCTGCCAAATCCATGATTGAATTGAGTCGCACTCAAGACGAAGAAGTCGGTGACGGAACGACCTCTGTCATTGTTCTCGGG GGAGAGATGCTTCATGTTGCTGAAGCTTTCATCGAAAAGAGCTATCATCCTACTGTCATTTGCCGAGCCTACAGTAAAGCTCTGGAGGATGCTATTGCCG TGCTTGACAAAATTGCTGTGTCCATTGATGTCAACGATCGTCCGGCAATGTTGGGTCTGGTCAAGAGTTGCATAGGCACAAAGTTCACTAGTCAATTTGG GGACTTAATTGCTGATCTAGCAATTGATGCCACCTCAACAGTTGGTGTTGACCTTGGCCAAGGGTTGCGGGAAGTTGACATTAAGAAATACATTAAGGTT GAGAAGGTGCCTGGCAGCCAGTTGGAAGATTCGAAGGTTCTTAAAGGGGTTATGTTTAACAAAGATGTGGTTGCCCCAGGAAAAATGAAAAGAAAAATTC CCAATCCGCGCATTATTCTTCTTGATTGCCCCGTTGAATATAAGAAAGGAGAGAACCAGACAAATGCCGAGCTGGTTAGAGAAGAAGACTGGGAAGTCCT GTTGAAAATGGAAGAGGAATACATAGAGAATATGTGTGTGCAGATACTTAAGTTCAAACCGGATTTGGTAATCACAGAGAAGGGTCTCAGTGATTTAGCA TGCCACTATCTGAGCAAAGCTGGTGTTAGTGCAATCAGGAGGCTGAGGAAGACTGATAATAACAGAATTGCCAAGGCATGTGGGGCCACCATTGTTAACA GGCCAGATGAGTTGCAAGAGTCTGATGTTGGTACTGGGGCTGGCTTATTTGAGGTTAAGAAAATTGGGGATGAATTCTTTGCTTTCATTGTTGATTGCAA AGATCCAAAGGCTTGTACTGTTCTCTTGAGAGGTGCCAGCAAGGATCTTCTGAATGAAGTGGAAAGAAACTTGCAGGATGCCATGGCTGTAGCAAGAAAT ATACTCAAGAATCCAAAACTCCTTCCTGGTGGGGGTGCTACAGAATTAACTGTATCTGCTGCTCTGAAGCAAAAAAGTTCATCCATCGAAGGCATAGAAA AGTGGCCTTATGAAGCTGCTGCTATAGCTTTCGAGGCTATACCAAGGACATTGGCTCAGAATTGTGGTGTTAATGTGATCCGAACCATGACTGCTCTGCA AGGAAAGCATGCGAATGGTGAAAATGCATGGATTGGCATAGATGGGAACACTGGTGAAATTACTGATATGAAAGAGAGGAAGATATGGGATGCATACAAT GTCAAAGCACAAACCTTCAAAACAGCAATCGAGTCCGCTTGCATGCTTCTGAGAATTGATGACATTGTGAGTGGAATCAAGAAGAAGCAGGCCCCTGGAG CCCAGGGTCCATCCAAGCCTAAGATTGAGACAGAAGCAGATGCAGACAGCGAGCAGATACTTCCCGACTGA
AA sequence Show only first row Show all	>Potri.004G133800.1 pacid=42795241 polypeptide=Potri.004G133800.1.p locus=Potri.004G133800 ID=Potri.004G133800.1.v4.1 annot-version=v4.1 MHAPVLVLRDSLKRESGTKVHHANIQAAKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDLAHPAAKSMIELSRTQDEEVGDGTTSVIVLG GEMLHVAEAFIEKSYHPTVICRAYSKALEDAIAVLDKIAVSIDVNDRPAMLGLVKSCIGTKFTSQFGDLIADLAIDATSTVGVDLGQGLREVDIKKYIKV EKVPGSQLEDSKVLKGVMFNKDVVAPGKMKRKIPNPRIILLDCPVEYKKGENQTNAELVREEDWEVLLKMEEEYIENMCVQILKFKPDLVITEKGLSDLA CHYLSKAGVSAIRRLRKTDNNRIAKACGATIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMAVARN ILKNPKLLPGGGATELTVSAALKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGEITDMKERKIWDAYN VKAQTFKTAIESACMLLRIDDIVSGIKKKQAPGAQGPSKPKIETEADADSEQILPD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G26360			TCP-1/cpn60 chaperonin family ...		Potri.004G133800 [exp]	0	1
AT5G40770		ATPHB3	prohibitin 3 (.1)		Potri.001G335700 [exp]	6.78	0.7896	Pt-PHB3.2
AT2G20060			Ribosomal protein L4/L1 family...		Potri.004G004800 [exp]	11.74	0.7595
AT4G16720			Ribosomal protein L23/L15e fam...		Potri.003G078700 [exp]	16.30	0.7773	Pt-RPL15.4
AT3G03960			TCP-1/cpn60 chaperonin family ...		Potri.019G034200 [exp]	17.32	0.7121
AT2G20585		NFD6	nuclear fusion defective 6 (.1...		Potri.017G014500 [exp]	22.13	0.7640
AT5G59970			Histone superfamily protein (....		Potri.005G115300 [exp]	25.00	0.7191	HFO911
AT4G21705			Tetratricopeptide repeat (TPR)...		Potri.011G051500 [exp]	25.05	0.7653
AT4G12600			Ribosomal protein L7Ae/L30e/S1...		Potri.013G116800 [exp]	26.83	0.7743
AT1G30580			GTP binding (.1)		Potri.001G465900 [exp]	27.16	0.7279
AT3G07140			GPI transamidase component Gpi...		Potri.014G190600 [exp]	31.98	0.7096

Compare expression of checked genes

Potri.004G133800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.