Plant FIBer expression Database

Potri.004G133900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G27510 342 / 9e-107 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004528
[exp]
360 / 3e-113 AT4G27510 290 / 3e-87 unknown protein
PFAM info
Representative CDS sequence
>Potri.004G133900.3 pacid=42795842 polypeptide=Potri.004G133900.3.p locus=Potri.004G133900 ID=Potri.004G133900.3.v4.1 annot-version=v4.1
ATGGTTGCCAAGAAATCCAAGGGGATGATCAAGCATCTCATCTCTGCAATTCAATCTCCACAGGGTCTAAATCCACCCAGCCTTAAAAGATTGTATGCTC
TGCTTCACCATTTGTCTACTCTGAAGACCCCCATAAGTGGCAGTTTCCCAGACATGAAGCTTAAGAAATGTCGGCTCAACTTCGAACTTAAAGACATCAA
CTGCCTGTCTGATATTTTGTTTAAGCAGCTTGAGGATAGGTTTCATGGGTTATTCTCTGCTTTACATGAGCATAATGTTTCGGCCGCTGATAATGGAAAA
TGTTTCCTGATTGAAGAACTGACATTGCTTCTGAGATGCTGTTTGGTTATGCTGGTTTTGATTGAACATGACCAGCCTCTTCTCATACAGAAGGGTTTGG
GTATTCTTTCCATGCTTAGCAGACTGGTTGCTACAGAGTTAAGTGGTCGAAATGGAAAGAGTTCTATTACTTTCAAGAAGTTGACTTCTCGTCAAAGTGT
TAGTGATGATTGCACCACCTCTATTACTGAGGAGTTTGTTGCTTCTTTATGTTTATGGAAGCCTTCTGATCCGCGCTATGCATTTCTATGTGCTGTTCTT
GAGGTATTTGCAGATGAGCTTTTGGTGCGTCAAACATTGAGACAGAATTTTGTGATGATTGATTCTGCACCTTCCCGAAGCGAAAGGCTATTTGTGTGCC
CCTCTGGGCATGGTAATATTGGAAGCGTTCTGGAGGTGATTTGTGCTCATTTTGTCGTATCACTTTCTGATGAGCAAGCTTTTGAAAATTTCCTCAACAG
ATTATTTTGGTGCCACGGGGAGGATTTCAGAATTCCTGAAATGAGTTTGCCGGCAGCCTTATCATTGCTTCTCAATCCCATCATGCTTTCTGCACCCAAA
TTGTTTCAGGCATACTTGATTTTAATGGTTTCTGAAGCCATTGGTATTTGTATGCCTCAACCAAATACGATGCTGGATCCTAAACTTATGGATTGCTATA
CAGAGGCATTTGAAAGGTCTATCTTCTTGTATACTAGGCACATGTCTAGTTTGCATGTTGATGATTTTTTGGGTGACAATGGTTCTTTTATCAGATCAGG
TTTGCATGGGAGCAGTAGTAAGCTGAATTTTGAATCTTTTCTTCATCCAGCCACAAGAGACAAACTGCATCATCTAATTTCCAAGTCATATGATGCATGG
AATTCCTATTTAAGCAGTATGTCTTCTAGAACAAATTCTGAACTGGTGGCTGCCTCTATTGCCTTCATGAAGGAGAGCCTGTGCATTGTTGATGAATCGT
TTAAAGATGAGATTCTGTCAATCTTAAGTTGCATAATACTTAGATATCCATCTAACGATATTGGTGACACTTTACTGTACAAAAAGGAGGAAACCAGCTC
TCAAGACATTTATCTTCTCGCTTCCATCTTGAAATTAATGAGTAGCTCATTGTTGCAAGCTATATGGTATGTAAAGCATCTTAGGTCTTCAGTTTGCCTG
AAATCACTGGAAGATGTGTCTTCATGCAAGGGCTACGATGTTATAGTGGATATTCTTGGTTGTTTTGAGCACTTCAGTATCAGTCTACCAATTCAAAAAT
TCTTATGTGAAACATTGCAATCTCACCCTGCAAGGCATAAGAAGTCCAGGTGGATGTTTTTTCACTTTTCGGGGTTGCTGTCATTGAGTTATGCTAGCGG
GCTTGATTTTTTAGTAAAGGACTGTTTATTTGCACTTATGGTAGTGTTGAATATGTTTATTATTGAAGAGGGGGATCTCGCTGCAGTGGATTCATTATTT
GGTTCCAGCTTGGAATCCTTTTCATCTAAATCCTCTGATAAATCTGAAGGGGTCATGGCAATCTCAAAATCTAGCCAAATAGTTTCATCGAAAATTCAAA
AGATTCAGGAGATGTACTTGAGAACACGCTCCACCATATGTTCCAACGACAGAAAACAACACAATCAAGCAGGAACTTCAGAATATGGCTCCATCATGAA
TGAGTTGGATTCTGTTGCCAGCATGGAAGATGCTAAGGAAACCTGCAATGGTGAGATCTTCCTGAAGTGCGTGCTAGGGAAGTATGCAAAATCCAAAGTT
ATAGATGATTTATCAGACTTCATTGAATGCGAGCATGGAAAGAATTACTCTGGCTGGTTGAGGGATCGACAAAGATTTAGAATATGGAAGTACAAGAAAA
CAACAATTCGAAGGTGGAAGAGAAAAAAAATGTGTTGGAATCATCTAAAAGGGTAG
AA sequence
>Potri.004G133900.3 pacid=42795842 polypeptide=Potri.004G133900.3.p locus=Potri.004G133900 ID=Potri.004G133900.3.v4.1 annot-version=v4.1
MVAKKSKGMIKHLISAIQSPQGLNPPSLKRLYALLHHLSTLKTPISGSFPDMKLKKCRLNFELKDINCLSDILFKQLEDRFHGLFSALHEHNVSAADNGK
CFLIEELTLLLRCCLVMLVLIEHDQPLLIQKGLGILSMLSRLVATELSGRNGKSSITFKKLTSRQSVSDDCTTSITEEFVASLCLWKPSDPRYAFLCAVL
EVFADELLVRQTLRQNFVMIDSAPSRSERLFVCPSGHGNIGSVLEVICAHFVVSLSDEQAFENFLNRLFWCHGEDFRIPEMSLPAALSLLLNPIMLSAPK
LFQAYLILMVSEAIGICMPQPNTMLDPKLMDCYTEAFERSIFLYTRHMSSLHVDDFLGDNGSFIRSGLHGSSSKLNFESFLHPATRDKLHHLISKSYDAW
NSYLSSMSSRTNSELVAASIAFMKESLCIVDESFKDEILSILSCIILRYPSNDIGDTLLYKKEETSSQDIYLLASILKLMSSSLLQAIWYVKHLRSSVCL
KSLEDVSSCKGYDVIVDILGCFEHFSISLPIQKFLCETLQSHPARHKKSRWMFFHFSGLLSLSYASGLDFLVKDCLFALMVVLNMFIIEEGDLAAVDSLF
GSSLESFSSKSSDKSEGVMAISKSSQIVSSKIQKIQEMYLRTRSTICSNDRKQHNQAGTSEYGSIMNELDSVASMEDAKETCNGEIFLKCVLGKYAKSKV
IDDLSDFIECEHGKNYSGWLRDRQRFRIWKYKKTTIRRWKRKKMCWNHLKG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G27510 unknown protein Potri.004G133900
[exp]
0 1
AT5G07610 F-box family protein (.1) Potri.008G016300
[exp]
7.74 0.8431
AT5G49840 ATP-dependent Clp protease (.1... Potri.004G229400
[exp]
8.66 0.8535
AT5G07610 F-box family protein (.1) Potri.008G016150
[exp]
8.83 0.8223
Potri.012G100001
[exp]
10.67 0.8302
AT2G41900 C3HZnF OXS2 OXIDATIVE STRESS 2, CCCH-type ... Potri.001G266700
[exp]
12.64 0.8247
AT1G75388 CPuORF5 conserved peptide upstream ope... Potri.002G032000
[exp]
15.36 0.7545
AT1G74700 NUZ, TRZ1 tRNAse Z1 (.1) Potri.015G064400
[exp]
15.55 0.7878
AT4G15850 ATRH1 RNA helicase 1 (.1) Potri.004G158000
[exp]
16.00 0.8015 ATRH1.1
Potri.001G298266
[exp]
16.70 0.8152
AT2G20280 C3HZnF Zinc finger C-x8-C-x5-C-x3-H t... Potri.016G084100
[exp]
17.94 0.8022

Potri.004G133900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.