Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	DMT901,Pt-MET1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49160 1805 / 0 MET2, DMT1, DMT01, DDM2, METI, MET1 METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1) AT4G08990 1745 / 0 DNA (cytosine-5-)-methyltransferase family protein (.1) AT4G14140 1727 / 0 MET02, DMT2, DMT02, MET2 DNA METHYLTRANSFERASE 02, DNA methyltransferase 2 (.1.2) AT4G13610 1539 / 0 MEE57 maternal effect embryo arrest 57, DNA (cytosine-5-)-methyltransferase family protein (.1) AT1G69770 226 / 7e-61 CMT3 chromomethylase 3 (.1) AT4G19020 225 / 2e-59 CMT2 chromomethylase 2 (.1) AT1G80740 203 / 1e-53 DMT4, CMT1 DNA METHYLTRANSFERASE 4, chromomethylase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T046100 [exp] 2902 / 0 AT5G49160 1802 / 0.0 METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1) Potri.018G138000 [exp] 2897 / 0 AT5G49160 1800 / 0.0 METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1) Potri.001G009600 [exp] 226 / 2e-60 AT1G69770 852 / 0.0 chromomethylase 3 (.1) Potri.003G100000 [exp] 221 / 4e-58 AT4G19020 1017 / 0.0 chromomethylase 2 (.1) Potri.003G215800 [exp] 86 / 1e-16 AT1G69770 221 / 7e-62 chromomethylase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004295 [exp] 2157 / 0 AT5G49160 1783 / 0.0 METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1) Lus10019220 [exp] 2066 / 0 AT5G49160 1706 / 0.0 METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1) Lus10014315 [exp] 222 / 2e-59 AT1G69770 836 / 0.0 chromomethylase 3 (.1) Lus10026024 [exp] 219 / 2e-58 AT1G69770 824 / 0.0 chromomethylase 3 (.1) Lus10010796 [exp] 212 / 4e-57 AT4G19020 790 / 0.0 chromomethylase 2 (.1) Lus10017720 [exp] 209 / 2e-55 AT1G69770 855 / 0.0 chromomethylase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00145 [poplar] [flax] DNA_methylase C-5 cytosine-specific DNA methylase CL0063 [poplar] [flax] PF01426 [poplar] [flax] BAH BAH domain CL0063 [poplar] [flax] PF12047 [poplar] [flax] DNMT1-RFD Cytosine specific DNA methyltransferase replication foci domain
Representative CDS sequence Show only first row Show all	>Potri.004G134000.2 pacid=42794457 polypeptide=Potri.004G134000.2.p locus=Potri.004G134000 ID=Potri.004G134000.2.v4.1 annot-version=v4.1 ATGGGATCTTCATCTATATTGGATATAACAACAAATGACCCAGTTGATAATTCTACTTTTTCCGCATCATCAGGAATGAGGAAGAACAAGAAAGGAAAAC AAAAATCTTCAGTTTCCAATGCAAAGAAGGAAGTGCCAGAAAAAACCGCAAAAGGAAAGAAGAGAAACTTCTCTGATACTAACAAGGAAGATCCTGCTGG TGGGTCGTTGACAAGGCCTAGGAGAGCTGCTGCATGCAAAGACTTCAAGGAGAAATCTCTACGTTTGCATGAAGAGAAGTCTTCTGTTGTTGAATCAAAG AAAGAACAAGTTGTCAACGAAGAGATTTTAGCTCTTCGTTTGACTCAAGGACAAGAAGAGGGTCGCCCCAACAGGAGATTGATTGATTTTGTTGTGCATG ATGCAAATGGTAACCCTCAACCCTTGGAGATGATTGAAGTTGATGATATGTTTATCTCTGGTGTTATAATGCCTCTTGAGGAGAGCCTTGATAAGGAAAA AGAAGTGCCTGTTAGGTGTGAAGGCTTTGGGAGGATAGAAGCATGGAATATCTCTGGTTACGAAGATGGATCCCCAGTCATTTGGCTGACTACTGAAGTA GCAGATTATGATTGCATCAAGCCTTCCGGTGGCTACAAGAAGTTCTTTGATCGTTTCTTTCAGAAGGCACTCGCTTGCATAGAAGTTTACAAAAAACTCT CAAGATTTTCTGGAGGAAACCCTGAATTCACCCTTGATGAGTTGCTTGCTGGCGTTGTGCGAGCAATGAGCGGAAATAAGTGTTTCTCTGGTGCTCCTTC CGTAAAGAATTTCCTCGTTTCTCAGGGTGAATTTATTTATCAACAAATAACTGGTTTAGACCAGACCTCCAAAAAGAACGATAAATTTTTTTCAGACTTG CCTGCTCTTGTTGCCTTGAGAGATGAAAGTCGCAATCATGGAAGTGTTCTGCTAGCAAAAGCAGCAAATCCTGGTGGCAACTTGGTGATTGATCCAAAGT CTGTGGATGGTGCTATTGTGAATCAGTCTAACCAGTCCAGCACCATAGCTGAGGAAGATGAAGATGCAAAGTTAGCAAGATTATTACAGGAAGAAGAGTA TTGGCACTCTAATATGAGGCAAAAGAAAAGTCGGGGTTCAGCTTCTGCATCGAACACAATCTACATCAAAATTAATGAAGATGAGATTGCAAATGATTAC CCTCTCCCTGTGTTTTACAAACACTCTGATGAAGAAACCGATGAGTATGTAGTTGTTGCAAGTGATGATGTAATTGACCACCCTGATGATCTCCCAAGAA AAATGCTTCATAACTGGTCACTTTATAACTCAGACTCAAGGTTGATTTCTTTGGAGCTTCTTCCAATGAAACCTTGTGAAGATATTGATGTCACCATCTT TGGATCAGGACGCATGACTGAAGATGATGGAAGCGGGTTCTGTCTTGATGATGATCCTGATCAGTCTTCTTCTAGGGGTTCGGAGGCTCAGGATGACATG GGTTTGCCAATATTTTTGAGTGCGATAAAGGAGTGGATGATTGAGTTTGGATCATCAATGATTTTTATATCAATACGCACAGACATGGCCTGGTATAGAC TTGGGAAGCCATCAAAACAATATGGTTCCTGGTACAAGCCAGTCCTAAAAACGGTAAAGCTTGCAAGAAGCATCATTACATTGTTGAAGGAGCAAAGTCG AGTATCACGGCTTTCTTTCGCAGATGTAATCCGGAAAGTGTCTGAGTTCAAGAAGGATCATCATGCTTATATTTCATCTGATCCAGCAGCTATTGAGAGG TACGTAGTTGTTCATGGACAGATAATACTGCAACTTTTTGCCGAGTTTCCAGATCAGAAGATCAAGAAATGTGCTTTTGTGGTCGGTTTGACTCGTAAAA TGGAGGAGAGGCACCATACTAAATGGGTAGTGAACAAAAAAGCCATTGTGCAAAAGTTTCAATCCAATTTGAATCCTCGAGCAGCAATGGATACTGTGGC TCCTGGATCCAAGAGGAAGCTCATGCAGGCAACAACCACAAGGCTGATCAACAGAATTTGGGGGGAGTACTATTCGAACTATTCTCCAGAGGATTTGGAA GAGGGAGCTGAATGTGAAGTGAAAGAAGAGGATGAAGCTGAGGAGCAGTATGAAAATGAAGATGATGATAAAGAGGAGGTGGTAGAGAAAACACTAAAAC CTCGTTCAGTGTCTGAACGCACTAAATCACATACTTCACAAAAAGAAGTAAGATGGGATGGGAATCCTGTAAGCAAAACATCTTCTGGAGAAGCCATTTA CAAGCGAGCCATTGTTTGTGGAGAGGTCATTGTGGTGGGGGATGCTGTCTTAGTGGAGGTTGATGAATCGGATGAACTTCCTGCCATCTATTTTGTGGAG TACATGTTTGAAACACGGAATGGAAGCAGAATGTTTCATGGGAGAATGATGAAGCGAGGATCTGAGACAGTTCTTGGTAACACTGCCAATGATAGAGAGG TTTTCTTAACAACCGAGTGCATGAATTATAAGTTACAGGATGCTAAGCAAGCAATTATTCTGGAAGTTCTAAAAAGACCTTGGGGACATGATCACAGGAA AGATAACATCAATGCTGATAGAATTGATAGGGAAAAGGCAGAAGAGAGGAAAAAGAAAGGATTGCAAGTAGAATATTACTGTAAAAGCTTGTACTGGCCG GAAAGGGGTGCTTTCTTTACTCTCCCGCTTGATACTATGGGTCTTGGGTCTGGTGTCTGCCACTCTTGTAACTTAAAAATAGCTGAAGAAGACAAGGATA TTTTCAGAGTAAATTCTTCTCAGACAGGATTTTCATACAAGGGAACTGAGTACTCTGTCCACGATTTTGTCTACGTAAGCCCTCATCAATTTGCTTCAGA AAGGGGGGAGAACGAAACTTTTAAGGGTGGAAGGAATGTTGGGTTGAAGCCTTATGTTGTGTGCCAGTTGTTGGAGGTTGTTCTAAAGGAACCAAAACAA GCCGAAACAAGATCCACCCAGGTCAATGTTCAAAGATTTTTCAGACCAGATGATATTTCACCTGAGAAGGCATATTGTTCTGATATTAGGGAGATATATT ACAGTGAAGAAACACATCTTTTATCAGTCGAGACAATTGAAGGGAAATGTGAAGTCAGAAAGAAAAATGACATTCCAACATGCAGTGCTCCTGCAATCTT TGATAATATCTTCTTCTGCGAGCACATGTATGATCCTTCTAAAGGGTCCCTCAAGCAGCTACCAGCTCAAGTCAAATCGAAGTTTTCTGCAGTGAGTAGA GATGGTGATGTTGCAAGTAGAAAGAGAAAGGGAAAGTCTAAAGAAGGAGAAAATGATATAGAAGCTGACAAACAAAGGGAAGCATCTCCAGAGAACCGTT TGGCCACGTTGGATATATTTGCCGGTTGTGGTGGATTGTCTGAAGGATTGCAGCAAGCTGGTGTCTCATCAACCAAGTGGGCTATTGAATATGAAGAGCC TGCTGGGGAAGCATTTAAACTCAACCATGCAGGGTCATTGATGTTCATTAATAATTGTAATGTGATCCTGAGGGCTGTCATGGAGAAATGTGGAGATGCA GATGACTGTATTTCTACTTCTGAGGCTGGTGAATTGGCTTCATCACTTGATGCAAAGGTGATTGATGGTTTGCCATTGCCAGGGCAGGTGGATTTCATCA ATGGAGGGCCTCCATGCCAGGGCTTCTCTGGAATGAATAGGTTTAATCAGAGCACTTGGAGTAAAGTTCAATGTGAGATGATCTTAGCATTCTTATCCTT CGCTGATTATTTCCGCCCAAAGTATTTCCTCTTAGAGAATGTGAGGAACTTCGTATCTTTCAATAAAGGACAGACTTTCCGTTTAACTATCGCTTCTCTT CTTCAGATGGGTTATCAGGTGAGGTTTGGTATTTTGGAAGCTGGAGCATATGGAGTATCCCAGTCACGTAAACGGGCCTTTATATGGGCAGCCTCCCCCG AAGAGATACTCCCAGAATGGCCAGAGCCAATGCATGTTTTTGCTGCCCCAGAGTTAAAAATCACATTGTCTGAGAAATCACAATATTCTGCTGTTAGAAG TACTGCTTATGGAGCCCCTTTCCGTGCAATAACAGTCAGAGATACAATTGGTGATCTCCCTGATGTAGGGAATGGTGCTTCGAAGACTAATTTGGAGTAC GGAAATGATCCTGTCTCTTGGTTTCAAAAGAAGATTCGAGGCGACATGGTTGTCTTGACTGACCATATATCAAAAGAAATGAATGAGCTGAATCTTATCA GATGCAAGAAGATCCCAAAGCGGCCAGGTGCTGACTGGCGTGATCTTCCAGATGAAAAGGTCAAATTGTCTACTGGACAAATGGTTGATTTGATACCATG GTGCTTGCCAAACACAGCTAAACGACACAATCAGTGGAAGGGGCTGTTTGGAAGGTTGGATTGGGAAGGGAACTTCCCAACATCAATAACAGATCCTCAG CCAATGGGTAAGGTGGGGATGTGCTTTCACCCTGAACAGGACAGGATTCTTACTGTTCGTGAATGTGCACGATCTCAAGGATTCCCAGATAGCTATCAGT TTTCTGGTAACATTCATCACAAGCATCGGCAAATCGGAAATGCTGTCCCTCCTCCTTTATCATATGCACTGGGAAGGAAACTTAAGGAAGCACTGGATAG TAAGAGGCGGAAATAG
AA sequence Show only first row Show all	>Potri.004G134000.2 pacid=42794457 polypeptide=Potri.004G134000.2.p locus=Potri.004G134000 ID=Potri.004G134000.2.v4.1 annot-version=v4.1 MGSSSILDITTNDPVDNSTFSASSGMRKNKKGKQKSSVSNAKKEVPEKTAKGKKRNFSDTNKEDPAGGSLTRPRRAAACKDFKEKSLRLHEEKSSVVESK KEQVVNEEILALRLTQGQEEGRPNRRLIDFVVHDANGNPQPLEMIEVDDMFISGVIMPLEESLDKEKEVPVRCEGFGRIEAWNISGYEDGSPVIWLTTEV ADYDCIKPSGGYKKFFDRFFQKALACIEVYKKLSRFSGGNPEFTLDELLAGVVRAMSGNKCFSGAPSVKNFLVSQGEFIYQQITGLDQTSKKNDKFFSDL PALVALRDESRNHGSVLLAKAANPGGNLVIDPKSVDGAIVNQSNQSSTIAEEDEDAKLARLLQEEEYWHSNMRQKKSRGSASASNTIYIKINEDEIANDY PLPVFYKHSDEETDEYVVVASDDVIDHPDDLPRKMLHNWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGRMTEDDGSGFCLDDDPDQSSSRGSEAQDDM GLPIFLSAIKEWMIEFGSSMIFISIRTDMAWYRLGKPSKQYGSWYKPVLKTVKLARSIITLLKEQSRVSRLSFADVIRKVSEFKKDHHAYISSDPAAIER YVVVHGQIILQLFAEFPDQKIKKCAFVVGLTRKMEERHHTKWVVNKKAIVQKFQSNLNPRAAMDTVAPGSKRKLMQATTTRLINRIWGEYYSNYSPEDLE EGAECEVKEEDEAEEQYENEDDDKEEVVEKTLKPRSVSERTKSHTSQKEVRWDGNPVSKTSSGEAIYKRAIVCGEVIVVGDAVLVEVDESDELPAIYFVE YMFETRNGSRMFHGRMMKRGSETVLGNTANDREVFLTTECMNYKLQDAKQAIILEVLKRPWGHDHRKDNINADRIDREKAEERKKKGLQVEYYCKSLYWP ERGAFFTLPLDTMGLGSGVCHSCNLKIAEEDKDIFRVNSSQTGFSYKGTEYSVHDFVYVSPHQFASERGENETFKGGRNVGLKPYVVCQLLEVVLKEPKQ AETRSTQVNVQRFFRPDDISPEKAYCSDIREIYYSEETHLLSVETIEGKCEVRKKNDIPTCSAPAIFDNIFFCEHMYDPSKGSLKQLPAQVKSKFSAVSR DGDVASRKRKGKSKEGENDIEADKQREASPENRLATLDIFAGCGGLSEGLQQAGVSSTKWAIEYEEPAGEAFKLNHAGSLMFINNCNVILRAVMEKCGDA DDCISTSEAGELASSLDAKVIDGLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFRPKYFLLENVRNFVSFNKGQTFRLTIASL LQMGYQVRFGILEAGAYGVSQSRKRAFIWAASPEEILPEWPEPMHVFAAPELKITLSEKSQYSAVRSTAYGAPFRAITVRDTIGDLPDVGNGASKTNLEY GNDPVSWFQKKIRGDMVVLTDHISKEMNELNLIRCKKIPKRPGADWRDLPDEKVKLSTGQMVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQ PMGKVGMCFHPEQDRILTVRECARSQGFPDSYQFSGNIHHKHRQIGNAVPPPLSYALGRKLKEALDSKRRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49160		MET2, DMT1, DMT...	METHYLTRANSFERASE I, METHYLTRA...		Potri.004G134000 [exp]	0	1	DMT901,Pt-MET1.2
AT1G69770		CMT3	chromomethylase 3 (.1)		Potri.001G009600 [exp]	1.00	0.9495
AT3G54750			unknown protein		Potri.006G199200 [exp]	2.23	0.9275
AT5G62410		TTN3, ATSMC4, A...	TITAN 3, structural maintenanc...		Potri.001G125000 [exp]	3.16	0.9343
AT5G52910		ATIM	timeless family protein (.1)		Potri.015G024300 [exp]	6.00	0.9313
AT5G46740		UBP21	ubiquitin-specific protease 21...		Potri.001G142000 [exp]	6.92	0.9307	Pt-UBP21.2
AT2G16780		MSI02, NFC2, NF...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.009G135100 [exp]	8.00	0.8658	NFC903,Pt-MSI2.1
AT1G67630		EMB2814, POLA2	EMBRYO DEFECTIVE 2814, DNA pol...		Potri.010G055900 [exp]	8.48	0.9071
AT2G40550		ETG1	E2F target gene 1 (.1)		Potri.019G056200 [exp]	9.16	0.8704
AT1G76740			unknown protein		Potri.002G066450 [exp]	9.74	0.8152
AT5G48720		XRI1, XRI	x-ray induced transcript 1 (.1...		Potri.002G244000 [exp]	10.53	0.8589

Compare expression of checked genes

Potri.004G134000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.