Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04290 166 / 2e-53 Thioesterase superfamily protein (.1) AT2G29590 77 / 4e-18 Thioesterase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G134066 [exp] 218 / 4e-74 AT1G04290 200 / 8e-67 Thioesterase superfamily protein (.1) Potri.009G042100 [exp] 73 / 1e-16 AT2G29590 177 / 8e-58 Thioesterase superfamily protein (.1) Potri.003G051900 [exp] 49 / 6e-08 AT3G16175 125 / 2e-37 Thioesterase superfamily protein (.1) Potri.002G155500 [exp] 47 / 7e-07 AT3G61200 139 / 4e-42 Thioesterase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004288 [exp] 204 / 4e-68 AT1G04290 226 / 5e-77 Thioesterase superfamily protein (.1) Lus10019228 [exp] 198 / 6e-66 AT1G04290 228 / 1e-77 Thioesterase superfamily protein (.1) Lus10040701 [exp] 74 / 3e-17 AT2G29590 200 / 7e-67 Thioesterase superfamily protein (.1) Lus10018205 [exp] 72 / 1e-16 AT2G29590 206 / 6e-69 Thioesterase superfamily protein (.1) Lus10018847 [exp] 52 / 1e-08 AT3G61200 149 / 4e-46 Thioesterase superfamily protein (.1) Lus10006834 [exp] 49 / 2e-07 AT3G16175 102 / 4e-28 Thioesterase superfamily protein (.1) Lus10000809 [exp] 48 / 4e-07 AT3G61200 135 / 3e-39 Thioesterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0050 [poplar] [flax] HotDog PF03061 [poplar] [flax] 4HBT Thioesterase superfamily
Representative CDS sequence Show only first row Show all	>Potri.004G134132.1 pacid=42794620 polypeptide=Potri.004G134132.1.p locus=Potri.004G134132 ID=Potri.004G134132.1.v4.1 annot-version=v4.1 ATGGATTTGGAATCTGTGAGGAGATACATAGAGAAAGGAGGACATGAAGATGACAAGAAAGCATCAAAAATTGAAGAAACGCCACTCAGATTCTTTGAAA AATTCGTAATGGAAGGCCTTCATATTGATCTCATCGAACCTGGGCGTGTTGTTTGCTCCATGAAAGTCCCTCCTCGTCTTCTGAACGGTAGCGATTGCTT GCATGCTGGGGCTACAGCAATGCTGGTTGATGTGGTAGGGTCAGCTGCACTGATCGCAGCAGGAGTGTTCTTAACAGGAGTTTCTGTGGAAATTAATGTT TCATACTTGGATGCTGCTTATGCTGATGAAGAAATCGAGATTGAAGCCAGGGTTCTACGTGCAGGCAAAGCTGTTGGATCTGCGAGTGTTGATTTCAGGA AGAAAAAGAGTGGGGCAATTATTGCTCAAGGGCGTCATACCAAGTACCTTCTTATTTCTAGTAAAATGTAA
AA sequence Show only first row Show all	>Potri.004G134132.1 pacid=42794620 polypeptide=Potri.004G134132.1.p locus=Potri.004G134132 ID=Potri.004G134132.1.v4.1 annot-version=v4.1 MDLESVRRYIEKGGHEDDKKASKIEETPLRFFEKFVMEGLHIDLIEPGRVVCSMKVPPRLLNGSDCLHAGATAMLVDVVGSAALIAAGVFLTGVSVEINV SYLDAAYADEEIEIEARVLRAGKAVGSASVDFRKKKSGAIIAQGRHTKYLLISSKM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04290			Thioesterase superfamily prote...		Potri.004G134132 [exp]	0	1
AT1G16445			S-adenosyl-L-methionine-depend...		Potri.007G069400 [exp]	2.23	0.8322
AT4G01100		ADNT1	adenine nucleotide transporter...		Potri.001G094100 [exp]	3.87	0.8145
AT4G04830		ATMSRB5	methionine sulfoxide reductase...		Potri.008G198600 [exp]	4.24	0.7785	PtrMsrB3
AT2G20830			transferases;folic acid bindin...		Potri.013G145700 [exp]	4.89	0.7944
AT5G13610			Protein of unknown function (D...		Potri.008G045200 [exp]	5.65	0.7998
AT5G20060			alpha/beta-Hydrolases superfam...		Potri.018G070700 [exp]	11.40	0.8248
AT2G44065			Ribosomal protein L2 family (....		Potri.007G142200 [exp]	12.64	0.7170
AT2G47490		ATNDT1	NAD+ transporter 1, ARABIDOPSI...		Potri.014G125600 [exp]	13.56	0.7876
AT3G23490		CYN	cyanase (.1)		Potri.010G068200 [exp]	15.00	0.7530	Pt-CYN.1
AT1G78780			pathogenesis-related family pr...		Potri.011G108900 [exp]	15.65	0.7216

Compare expression of checked genes

Potri.004G134132 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.