Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08490 977 / 0 SLG1 SLOW GROWTH 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G40720 422 / 1e-134 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 422 / 6e-134 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G18485 421 / 7e-133 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G21300 416 / 5e-132 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 415 / 2e-131 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G16480 411 / 1e-129 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G22150 407 / 4e-129 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G63370 407 / 3e-128 OTP86 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 401 / 5e-127 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G215500 [exp] 456 / 2e-146 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G047600 [exp] 453 / 1e-144 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 451 / 2e-144 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 449 / 2e-144 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.011G156800 [exp] 436 / 7e-140 AT4G21300 842 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G075800 [exp] 434 / 1e-138 AT3G57430 1189 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G258500 [exp] 433 / 1e-138 AT2G40720 481 / 4e-157 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G067500 [exp] 431 / 5e-136 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G067000 [exp] 422 / 6e-135 AT1G18485 500 / 8e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016943 [exp] 1148 / 0 AT5G08490 924 / 0.0 SLOW GROWTH 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004081 [exp] 482 / 3e-156 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014707 [exp] 468 / 6e-151 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 446 / 3e-142 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 443 / 2e-141 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008967 [exp] 439 / 6e-141 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 433 / 3e-138 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028855 [exp] 441 / 2e-137 AT4G21300 873 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014828 [exp] 405 / 4e-135 AT5G08490 339 / 2e-110 SLOW GROWTH 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038400 [exp] 421 / 8e-134 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.004G134300.1 pacid=42796403 polypeptide=Potri.004G134300.1.p locus=Potri.004G134300 ID=Potri.004G134300.1.v4.1 annot-version=v4.1 ATGGTTGGGCCATATTTAAAAGCATGGAATACCATGATAAGTGACTGTAATGGAGATTTTAGACAAGATTATCAGGCTGTTGCATCGATTCTCAAGTCTT GTGCTGGACTATCAGCTATAAAATGGGGGAGAGCTCTTCATGGGAGTATTGTTAGAATAGGTCATGTTTCTTGCCATGCTGTGTCTAAGGCCCTGCTTAA TATGTATGCCAAATGTGGAGCTCTAGATGAAAGCAAGAAACTTTTTGGTGAAATTGGTAGTTGTAATGATCGTGATCCTATTTTTTGGAACATTCTCTTA TCTGGGTATGCTGGGTCCAGAGTTTATGATGCTGAGACTTTGAGGTTATTCAGGGAAATGCATGGTGCTAATTATCCGAAGCCTAGTTCTGTTACTGCTG CTATTGTTCTTCCTGTTTGTGCTCGCTTAGGGGATGTATATATGGGTAGGAGTGTGAATTGTTATGCTATTAAATCTGGATTGGATACACATACACTTGC TGGGAATGCATTGGTGTCGATGTATGCAAAATGTGGACTAGTATGCCAAGATGCTTATGCTGCTTTTGATAGTATTGATGAAAAAGATGTTGTTTCATGG AATGCGATTATTTCAGGGTTTGCAGAGAATAATTTGATGGAGGATGCATTTAGATTGTTTAGTTCGATGCTAAAAGGTCAAATAAAGCCAAATTATACTA CCTTAGCTAATATTCTGCCTGTTTGTGCATCTTTTGACGAGTATATTGCTTACTGGTTTGGGAAAGAGATTCACGGTTATGTGCTCCGGCATAACGAGTT GTTAGCGGATGTTTTTGTCTGGAATGCTTTGGTAAGTTTCTATTTAAGAGTTGGACGGGTAGAAGAAGCAGAATTGCTGTTTCGAAGAATGGAATTGAGA GATTTGGTTTCATGGAATGCTATTATTGCAGGATATGCATCAAATGGTGAATGGTCAAAAGCTTTGGAATTGTTTCATGAATTACTTACTCTAGACATGA TTGAGCCAGATTCTGTCACCCTTCTCTGCATTATTCCTGCCTGTGCACAGTCTAGAAACTTGCATGTTGGTAAAATGATTCATGGCTATGTCCTTCGGCA TCCATTATTATGTGAGGATACATCTGTCGGGAATGCTCTAGTTAGTTTTTATGCCAAGTGTGATGACATAGAAGGAGCATACGAGACATTTTTTATGATT TCTCGGAGGGACCTAATATCATGGAATTCTATGCTTGATGCCCTTGTTGAGAGTGGGTATAATACCTGGTTTCTGGAATTATTACGGTGGATGCTTAGTG AAGGAACTACACCTGATTCTGTTACAATCTTAAGTGTTGTTCACTTTTGTGTTAATGTTTTGAAAGAAGACAAGGTTAAAGAGGCCCATAGCTACTCAAT TAGGCATCGTCTTTTAGCATCAAAATTTGATGTTGAACCTACCATTGGAAATGCAATACTTGATGCATATGCTAAATGTGGTAACATTGAGTACGCATCT AAAGTTTTCCAGAGTTTATCAGAGAACAGGAATTTGGTCACTTTCAAAGCAATAATCTCAGGTTATATCAATTGCGGGTTACTTGATGAAGCATATATAA CTTTTAACAGGATGCCTTCCTCAGATCTCTCTGTTTGGAATCTAATGGTTAGATTATATGCTGAAAATGATTGTTCTAGTCAAGCTCTTGGTCTTTTCCA TGAGCTACAAGCTCATGGAATAAAACCCGATGCAGTGACTATCATGAGCCTCCTTCCAGCATGTGCTGAAATGGCTTCTGTGCAATTGATAAAGCAGTGC CACGGATATGCGATCAGGTCTTGTTTTGGTGATCTCCACTTGGATGGAGCTCTGCAAGATGTATATGCAAAATGCGGCAGCATAGGCTATGCTTTTAAAC TTTTTCAATTAATTCCAAATAAGGATCTGATTATATTCACTGCCATGATTAGAGGATATGCCATGCATGGTATGGGAAAGGAAGCTCTTGGGACTTTCTT TCATATGATTGAATTGGGTATAAAGCCAGATCATGTTATCATCACCACTGTTTTATCTGCATGCAGTCATGCTGGCCTTGTAGATGAAGGATTAAATATC TTTTATTCTATAGAGAAGGTCCATGGAATGAAGCTAACCATGGAACAATATTCTTGTGTGGTGGATCTTCTTGCTCGGGGAGGTCGAATTGATGATGCAT TTTCTATGGTCACTGGAATGCCCATTGAAGCTAATGCAAATATATGGGGGACGCTGTTAGGTGCCTGCAGGACCCATCATGAAGTGGAATTGGGTCGTTT TGTAGCTGACCGTTTATTTAAAATTGAAGCAGAGAATATTGGGAACTATGTAGTTTTGTCAAACCTGTATGCAGCAGATGCTAGATGGGATGGAGTCATG GAAATAAGGAAACTGATGAGGACAAGAGATCTTAAAAAGCCAGCAGGATGCAGTTGGATTGAAGTGGAGAGGAGAAAAAATGTCTTTGTGGCTGGAGATA CTTCTCATCCTCATAGAATTGATATTTACAGAATATTAAGTACCTTAAATGGCCAAATCAAAGAGCCATTTCAATTAAATCAACTGTTAAACTTACAGCT TTCTGAATGTTAG
AA sequence Show only first row Show all	>Potri.004G134300.1 pacid=42796403 polypeptide=Potri.004G134300.1.p locus=Potri.004G134300 ID=Potri.004G134300.1.v4.1 annot-version=v4.1 MVGPYLKAWNTMISDCNGDFRQDYQAVASILKSCAGLSAIKWGRALHGSIVRIGHVSCHAVSKALLNMYAKCGALDESKKLFGEIGSCNDRDPIFWNILL SGYAGSRVYDAETLRLFREMHGANYPKPSSVTAAIVLPVCARLGDVYMGRSVNCYAIKSGLDTHTLAGNALVSMYAKCGLVCQDAYAAFDSIDEKDVVSW NAIISGFAENNLMEDAFRLFSSMLKGQIKPNYTTLANILPVCASFDEYIAYWFGKEIHGYVLRHNELLADVFVWNALVSFYLRVGRVEEAELLFRRMELR DLVSWNAIIAGYASNGEWSKALELFHELLTLDMIEPDSVTLLCIIPACAQSRNLHVGKMIHGYVLRHPLLCEDTSVGNALVSFYAKCDDIEGAYETFFMI SRRDLISWNSMLDALVESGYNTWFLELLRWMLSEGTTPDSVTILSVVHFCVNVLKEDKVKEAHSYSIRHRLLASKFDVEPTIGNAILDAYAKCGNIEYAS KVFQSLSENRNLVTFKAIISGYINCGLLDEAYITFNRMPSSDLSVWNLMVRLYAENDCSSQALGLFHELQAHGIKPDAVTIMSLLPACAEMASVQLIKQC HGYAIRSCFGDLHLDGALQDVYAKCGSIGYAFKLFQLIPNKDLIIFTAMIRGYAMHGMGKEALGTFFHMIELGIKPDHVIITTVLSACSHAGLVDEGLNI FYSIEKVHGMKLTMEQYSCVVDLLARGGRIDDAFSMVTGMPIEANANIWGTLLGACRTHHEVELGRFVADRLFKIEAENIGNYVVLSNLYAADARWDGVM EIRKLMRTRDLKKPAGCSWIEVERRKNVFVAGDTSHPHRIDIYRILSTLNGQIKEPFQLNQLLNLQLSEC

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G08490		SLG1	SLOW GROWTH 1, Tetratricopepti...		Potri.004G134300 [exp]	0	1
AT1G71420			Tetratricopeptide repeat (TPR)...		Potri.013G098800 [exp]	3.16	0.8880
AT2G22300	CAMTA	SR1, CAMTA3	CALMODULIN-BINDING TRANSCRIPTI...		Potri.007G093400 [exp]	4.47	0.8478
AT5G01110			Tetratricopeptide repeat (TPR)...		Potri.014G052800 [exp]	4.89	0.8774
AT4G08210			Pentatricopeptide repeat (PPR-...		Potri.002G087400 [exp]	5.19	0.8863
AT1G80880			Tetratricopeptide repeat (TPR)...		Potri.001G043500 [exp]	6.48	0.8709
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Potri.001G359900 [exp]	7.34	0.8691
AT1G12770		ISE1, EMB1586	INCREASED SIZE EXCLUSION LIMIT...		Potri.001G102501 [exp]	7.41	0.8626
AT1G51965		ABO5	ABA Overly-Sensitive 5 (.1)		Potri.013G105000 [exp]	7.48	0.8415
AT2G23740	C2H2ZnF	AtCZS	nucleic acid binding;sequence-...		Potri.005G129800 [exp]	8.12	0.8723
AT5G56310			Pentatricopeptide repeat (PPR)...		Potri.003G223900 [exp]	8.24	0.8508

Compare expression of checked genes

Potri.004G134300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.